RNA id: XM_036986895.1


Basic Information

Item Value
RNA id XM_036986895.1
length 3092
RNA type mRNA
GC content 0.55
exon number 19
gene id LOC110530822
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87003179 ~ 87406445 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagcgagagagagagagagagacagagagagagagacagagagagagagagagagagagagagagagaggacagcaggcaGAGAGCTCGCCGAACGGAAACCACTCTATCCTCCCGGTGTAATACCGGAGTCTTGAGATTCATCCCCGCGCGAAGTCAGTTGGAAGTCGAATACGGAGCAGCCGTTGGTCACTCACACCGAACCGAGGAAGAAGGGAGAAAATAACAGTTTTATTATCCCTCTGTCAGTTAGATGCGAAGTATAGGGAGGCAGACAATTGAACTTGTGACAGACAGAACAATAGTTTATCTCTCTCAAGTTAACCCTGCTACCGGGGGGTTAATAACACTACGGCTGTCCGTTTCGATATGGATAAAGTTATGCACGGTCTCTTGGCTGCTATCAGCTTGCTTGTGACGATACGAGGACAAGTCTATAAAGGTGATTGTGACTTTGACAAGCCGTTAGCAGCCTGCGGGTACAGCCAGGGGAGAGAGGACGATCTAGATTGGGAACAGGCCAACACCAGAGTGAAGCCCACAGCAGACCCCTGGATGCCAACAGATTCAGCCTTCATAATGGTCAACACGTCGGGGCGTTTCGCTGGTCAGAAGGCCCTCCTCCTGACCCCCCAGCTGAAGGAGAATGACACCCACTGCGTAATCTTCGAGTACTTCCTGTCTGGCCACGAGGGGGCGGGACCGGGGCAGCTCAACGTGTACATCAGAGAGAACAACAGTCCACTGGGCATGCCCGTCTGGAACGTGTCTGGGCCAGCTACTAGAGCCTGGGTGCAGGTAGAACTGGCCATCTCTACCTACTGGCCCAACTTCTATCAGatgGTGTTTGAAGTGGTGACCTCTGGCCATCGCGGCCTGCTGGCCATCAAAGATGTGGTGCTGCAGGGCCACCAGTGCATGAACACCCCTCACTTCCTGACCATAAAGGGTGTAGAGGTGAACGCTGGACAGACGGCCGCCTTCCACTGTACTGTCAACGGACGACAGAGGGACAACTTCAACCTCTGGTTACAGGGTATTGGTGGACGCGAGGCCCCTATGAAGTCCACTAAGCCGTGGAACAACAGACGCTTCATCGGGACCTTCGATGTGGAAAACACCACTAAGGGAGATTCTGGACGCTACCGATGTATTGTCCATTCTGACAACGGGGTCGGAGTGTCCAACTACGGAGAACTCACCATAAAACAACCTCCGGTGCCCATCGCTCCCCCGCAGCTGACAGCGGTCGGCGCCACCTACATGTGGATCCAACTCAACGCTAACTCCATCAACGGAGACGGGCCAATCATCGACCGAGAGGTGGAGTACCGTACCGTGTCAGGGACCATGTATGACCTGCAGCCTGTGGACAAGACCACCCATAAGATTGGTCACCTGACACCAGACACAGACTATGAGATCAGTGTGCTGTTGACCAGGCCCCTGGATGGAGGGACTGGGGCCCCCGGGCCTCCTCTCAGGGCCAGGACCAAGTGTGCTGAGCCAATCCACGGTCCCAGACGTCTGGAGGTAGTTGACGTCCAATCTAAACAAGTCACCATTCGCTGGGAGCCGTTTGGCTACAACGTGACACGTTGTCATAGCTACAACCTCACGGTGCAGTACCGCTCCCGCGTGGCGGGGAAGGACGAGACCCGGGAGGAGGTGTGTTACGACACCCTGGGTCGCGACCCCCAGCACACCATCCACAACCTGACCCCCTACACCAACCTGTCAGTCAAACTGGTCCTCAAGAACCCAGAGGGGGTCAAAGAGAGCCGAGAGATGGCGCTGCAGACGGATGAAGATGTACCGGGAGCTATCCCTCTGGACTCCATCCAGGGCAGTGCTTATGAAGAGAAGATGATCCTGAAATGGAGAGAACCAGCCCAGACCTACGGAATCATCACTCAGTACGAGATCTCCTTCAAGGCAGTGAGCTCTTTTGATCCTGAGCTGGATCTATCCAACCAGAGTGGGAAAGTCCTGAACCACGTCAACGAAAGCAGCCACATCTTCCTGGGTCTCTACCCAGGATCTACCTACTCCTTCACTCTCAGAGCCTCCACCGCCAAGGGCTATGGCCCCCCAGTCATCACACAGTTCACCACCAAGATATCAGCTCCCTCCATGCCAGCCTATGACCAGGAGACATCTCTgaaccagacagacagcacagtGACTGTCCTGCTGAAACCTGCACAGAGCCGAGGGGCACCTGTCAGtGTATACCAGGTggtggtagaagaggagaggcctCGGAGGGCGAGGAGGGGAGCGGTTGAGATTCTCCGCTGTTACCCTGTCCCCATCCACTCCCAGAACTCCACGGTCCTGAACTCTGGGTACTACTTCACAGCTGAGTTCCTCGCCGTAGGGCTACAGGCTCCTCAACCCTTCACTGTGGGAGACAACAAGACCTACGGTGGATACTGGAACGCCCCCCTACTGCCCCAGAAGAGCTACAGCATCTACTTCCAGGCGGTCAGCACGGCTAACGGGGAGACCAAGATTGACTGTGTCCGAGTCGCCACCAAAGCTGCCATACTGGTGACTCAGCTCACTACTCCGTACATCCGCATCGCGCCTGCGGCTGGTGACGACCAACTAACAGGAGAGGCCACCCATAAGCCAGTCGCTGTGGagccagagaaacagacagacaacacagtgaAGATAACCGGCGTAATCGCTGGCATCCTCCTCTTTGTCATCATCTTCCTCGGAGTCATCCTCCTCCTGAAGAAAAGAAGAACCTACCACTCCTACACTTACTACCTGAAGCTGGCTAAGAAGCGTAAGGAGACGTTGAGCAGTACTCGACAGGAGATGACAGTGATGGTTAACTCTATGGATAAGAGTTATACGGAGCAGGGGACAAACTGCGACGAGGCCTTGTCGTTCATGGACACTCACAGCCAAACCCTCAACACCAGGAGTGAGTGTCCTCTCACACTCAATGGCCGTAGCGAGTGCACCCTCGCCGTCAATGGCAGAACTGTGTTGTCCCCTTCCTCCTTCACCCTGAACAAGTCTAATACCCTCAGTTCAACGCTCCCCAAGTCCTACTACCCAGGTAAACACTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU861426 lncRNA upstream 54932 86947771 ~ 86948247 (+) True G758267
TU861424 lncRNA upstream 57754 86944611 ~ 86945425 (+) True G758265
TU861416 lncRNA upstream 72531 86923017 ~ 86930648 (+) True G758257
TU861393 lncRNA upstream 80574 86922069 ~ 86922605 (+) True G758234
TU861406 lncRNA upstream 106708 86896044 ~ 86896471 (+) True G758247
TU861638 lncRNA downstream 1082 87407527 ~ 87412837 (+) False G758432
TU861644 lncRNA downstream 1082 87407527 ~ 87434306 (+) False G758432
TU861647 lncRNA downstream 1082 87407527 ~ 87435638 (+) False G758432
TU861639 lncRNA downstream 2508 87408953 ~ 87424989 (+) False G758432
TU861640 lncRNA downstream 3613 87410058 ~ 87426400 (+) False G758432
XM_036986641.1 mRNA upstream 82666 86912177 ~ 86920513 (+) False ly97.3
XM_036986627.1 mRNA upstream 375277 86591510 ~ 86627902 (+) False LOC110530851
XM_036986626.1 mRNA upstream 419441 86569700 ~ 86583738 (+) True LOC110504868
XM_036986621.1 mRNA upstream 447373 86352274 ~ 86555806 (+) True LOC110530844
XM_036986618.1 mRNA upstream 1121962 85793000 ~ 85881217 (+) True LOC110531032
XM_036986642.1 mRNA downstream 126505 87532950 ~ 87549838 (+) True LOC110519501
XM_036986647.1 mRNA downstream 162627 87569072 ~ 87661724 (+) False LOC110512128
XM_036986645.1 mRNA downstream 162627 87569072 ~ 87670895 (+) False LOC110512128
XM_036986643.1 mRNA downstream 162627 87569072 ~ 87671104 (+) False LOC110512128
XM_036986644.1 mRNA downstream 162744 87569189 ~ 87671104 (+) True LOC110512128
TU861418 other upstream 69168 86933446 ~ 86934011 (+) True G758259
TU861389 other upstream 82670 86912176 ~ 86920509 (+) False ly97.3
TU861390 other upstream 82670 86912176 ~ 86920509 (+) False ly97.3
TU861391 other upstream 82670 86912176 ~ 86920509 (+) True ly97.3
TU861161 other upstream 367719 86634784 ~ 86635460 (+) True G758045
TU861774 other downstream 310372 87716817 ~ 87717718 (+) True G758531
TU862226 other downstream 325849 87732294 ~ 87733139 (+) True G758866
TU862276 other downstream 468675 87875120 ~ 87876684 (+) True G758892
TU862389 other downstream 559247 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 585525 87991970 ~ 87995145 (+) True G758988

Expression Profile