RNA id: XM_036986642.1


Basic Information

Item Value
RNA id XM_036986642.1
length 2870
RNA type mRNA
GC content 0.53
exon number 4
gene id LOC110519501
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87532950 ~ 87549838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagagagacagagagagagagagagagagagagagagagagacagagagagagagaaagagagagacagcgactgGCGGATTACACACAGCACCAGACACGAGGCTTTGGAGGATGCAGGAACATGAACCATTTACTGCTAAGACAGTCGGTTGATTGACAAGCCCGTCGTCCAATCAAATCGTCGCCATGATCGCCACGGGCGGCCTGCTGCGTATGAACCGGCGCCAAGACTCCCAGCGATCTAAGAACCACGCTGAGAACCAGAGGAAGAGGAAACAagcagagaggaagaagaggaatgATGTGGTAGTGGTGAAGGGGAAACTCAACCTGTGTTCCCCATCTGGGCTGGTGGCTGCGGTGGGGGTAGTGGTGTTGATGCTGGGGATAGCCATGGCTGTACTGGGCTACTGGCCACATGAAGGCCACAGCCAAGGGTATGCATCCGGGGTATCACCATGGGAGGAGCGGAGAGACAACGGCAGGATGAGCTACTCCAAGAGCCCCCTGGTGTCTGTCACCTGGAGCAATAACAAGGATAACAACACAGCCAACCTGACTGTTGGGGAGTTGACCAACCAGACTGTTGGGGAGTTGACCAACCAGACTGTTGGGGAGTTGACCAACCAGACTGTTGGGGAGTTGACCAACCAGACTGTTGAGGAGTTGACCAAACAGACTGTTGGGGAGTTGACCAACCAGACTGTTGGGGAGTTGACCAACCAGACTGTTGAGGAGTTGACCAACCAGACTGTTGAGGAGTTGACCAACCAGACTGTTGGGGAGTTGACCAACCAGACGAGTGCTGAGTTGACAAATCAGATGAGTGATGCTATGAATGGAAGTGTTCCTCAACCTGTATCTGTGTCGACAAGTCCCCGTCCTCCCTCAGGGGGGTTTCTCTCTGATTTCCTGGACAGCTACCTCTACTCAGACAACTTGAAGGTGTTTGGGCCCTTAGTGATGGGGATTGGCATCTTCCTCTTCATCTGCGCTAACGCCGTGCTTCACGAGAACAGAGACCAGAAGACCAAAGTCATCAACCTCAGAGATATCTACTCCACGGTCATCGACCTCCACATCACACGGACCAAGGACCACTCGCCGATTAACGGACTGGTGAACTATGTGCAGTCCAGGGGCAGTGTGGACATAAATTCGGGTTCGTTCCATCCTGGCGAGATGCTAGAGCACAGTCCTTGGCCCTCCACTACCGTATCAAGCCACCAGGGGGAGATAGGTAGCAGTGAGCAGCAGTATAGACGACCGTCAGTGGCGGGCCGGCAGCGGAGCTGGTCCAGAGACAACCAGACGTTCACGGAAAGTGTGTATAGCATCTACAGAGACCAGAAGCGCAGGTGTTCAGAGCAGACACCCTACCCCAGACAGTGGGACTCAGAGCAGACACCCTACCCCAGACAGTGGGACTCAGAGCAGGCCTCGTGCCCCAGGCAGTGGGACTCAGAGCAGGCCTCGTACCCCAGGCAGTGGGACTCAGAGAAGGCTTCGTACCCCAGACAGCGGGACTCAGAGAAGGCCTCGTACCCCAGGCAGTGGGACTCAGAGCAGGCCTCGTACTACAGACAGCGGGACTCAGAGCAGGCCTCGTACCCCATGGAGTGGGAGGGTACAGCATCCATTGTCAGTTCTTCTTTTAACGTCTTCACCCTCCCGATCATCACACTTAACAACGGTGCAGTGGAGgaggggggacaggaggggggacaggaggggggacaggccgagagagaggaggaagtgatTACAGATGTCAAGGATTTTAGTGGAAATGGGATTGAGCAAGAGCAAGTAGCAGGTTATAGTCAAAGTCTGGATAATACAGAGAATAATTCTTCAAGGAGGACCTCGATGAATCCCCAAGAATCCTATAGTCAATGTCTGGGTACTAAAGAGAAGGATTCTTCAAGGAGGACCTCGATGAATCCCCAAGAATCCTATAGTCAATGTCTGGGTACTAAAGAGAAGGATTCTTCAAGGAGGACCTCGATGAATCCCCAAGAATCCTATAGTCAATGTCTGGGTACTAAAGAGAAGGATTCTTCAAGGAGGACCTCGGTGAATCCCCTGGAATATGAGGGTGGTACCGTCATGACCCTAACTGAACCAGATGAGGCGCTACAAGGACAGACCCCCACCCCACAGGGCCCCCAGCTGTTCCCTCCTTCTCCCGTTTTCAGGGCGACGACGGGGATGGGATCTCGCCTGTCACTCAACTCCCTCTCCAGCCCAGGGGTCGACCAGCCCCAGTCGGCACGACGATGCAGCCTCACCGTGGCCGTCTGTCGTCAAGGCGACCGGGCTCGTCGGTTCAGCTGTACGCGTCTGGAGCGTTCGAACAGTAAGGGATACATCAAACTGGAAACCGTGGACGGAGATTCCTTCGAGGTACCAGATGTAGTGACTTCCTGTGTGCCTGACTCGAATCAGGAAGAAGAAGTAGTAGCAGACGAGGTAGCAGAAGCAGCTcaaggaaaaagggagagggtgACTGTCACCCTTAGCTCTTCTTTAACAGAACTCTAGACAGATCTGTCTCAATCGTCACGTCGATCTCTTCAGACAGTGATCAAAACTAACCAATAGAGTCAAGGTACAGCCAAAAGGAACTCAGGAGAGGAGAATCAAATGAACTCACAACAAATCAACTCTAGACAGATCTCTACACAGAACTCTAGAACTATCTCTTTGTGTCTCATCATTGTAGATGGATGTCATAGTTAGTGGAAGACAGGGATCAACACTGACCTATAGAGTCAAGGTGCAGCCAGAAGGATGTCAGGAgatcagggagaaggagagggagagagagagagggagagagagagagagagagacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU861647 lncRNA upstream 97312 87407527 ~ 87435638 (+) False G758432
TU861644 lncRNA upstream 98644 87407527 ~ 87434306 (+) False G758432
TU861642 lncRNA upstream 100186 87416136 ~ 87432764 (+) True G758432
TU861640 lncRNA upstream 106550 87410058 ~ 87426400 (+) False G758432
TU861639 lncRNA upstream 107961 87408953 ~ 87424989 (+) False G758432
TU861751 lncRNA downstream 73491 87623329 ~ 87633544 (+) True G758512
TU861753 lncRNA downstream 83906 87633744 ~ 87634980 (+) True G758513
TU861761 lncRNA downstream 89698 87639536 ~ 87640417 (+) True G758520
TU861732 lncRNA downstream 129511 87679349 ~ 87684205 (+) True G758495
TU861724 lncRNA downstream 140752 87690590 ~ 87691585 (+) False LOC110512127
XM_036986895.1 mRNA upstream 126505 87003179 ~ 87406445 (+) True LOC110530822
XM_036986641.1 mRNA upstream 612437 86912177 ~ 86920513 (+) False ly97.3
XM_036986627.1 mRNA upstream 905048 86591510 ~ 86627902 (+) False LOC110530851
XM_036986626.1 mRNA upstream 949212 86569700 ~ 86583738 (+) True LOC110504868
XM_036986621.1 mRNA upstream 977144 86352274 ~ 86555806 (+) True LOC110530844
XM_036986647.1 mRNA downstream 19234 87569072 ~ 87661724 (+) False LOC110512128
XM_036986645.1 mRNA downstream 19234 87569072 ~ 87670895 (+) False LOC110512128
XM_036986643.1 mRNA downstream 19234 87569072 ~ 87671104 (+) False LOC110512128
XM_036986644.1 mRNA downstream 19351 87569189 ~ 87671104 (+) True LOC110512128
XM_036986648.1 mRNA downstream 138093 87687931 ~ 87691743 (+) False LOC110512127
TU861418 other upstream 598939 86933446 ~ 86934011 (+) True G758259
TU861389 other upstream 612441 86912176 ~ 86920509 (+) False ly97.3
TU861390 other upstream 612441 86912176 ~ 86920509 (+) False ly97.3
TU861391 other upstream 612441 86912176 ~ 86920509 (+) True ly97.3
TU861161 other upstream 897490 86634784 ~ 86635460 (+) True G758045
TU861774 other downstream 166979 87716817 ~ 87717718 (+) True G758531
TU862226 other downstream 182456 87732294 ~ 87733139 (+) True G758866
TU862276 other downstream 325282 87875120 ~ 87876684 (+) True G758892
TU862389 other downstream 415854 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 442132 87991970 ~ 87995145 (+) True G758988

Expression Profile