RNA id: XM_036986648.1


Basic Information

Item Value
RNA id XM_036986648.1
length 3595
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110512127
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87687931 ~ 87691743 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacagtagagagAACCTGCCTGTAATTCCCCTCCAGTCCTACAGAGGGCAGAAACACCAGCGTCACTTCCTCTGAGAGCTGACGGTCACAACAAGGtggaggaagaggcagagagaccAGGGTTGTTGCGTCGTCTTCGACTGCAGCCTTGCGTGACAACACCAAACCGGATTCGTGTTTCTGGTATAgacattttttcttcttcttcttctcgaAGGGGACCAATCTTATATTTACACATTTCATCGACCAGTGTAAATGAACTGTTCTGTTTGGTGTTTTAACTTGGACAAAAGTTCAGGAAAACCTTCTAATGGAGGCTTGCTGGGCAAAATGGCTGGGCTCTCTGAAATGTGAAACGTACACGGGTCAGCAGTGGTAGCAGAAATAACTGGCTACGAAAGGGCGTTTTTATAATTCCTTATAACTCGCAGAAATACCGTTTATTTTCACCGCTGGGTACAAAACAGTTTTGTATCCATATGCGTTGGGATTTCATTTTATTGCGGATACCTGCATTTTTTTTTTCGACAGTTCCGTGTTGTTTTTATTTTCCTTCCCCCAAAAGCCGATTGCTGCTTGACTGATTTGGCATTGTTACTGCGGTCTGTTATTGTCTCGTCGTCAGCTGTGGATACTCTCACTGTTGGATGGGAACCGACGAACAACAATATATATACGAAGCAACAGCCGACCGAACACATTTCAGAAGTTTGCTTTGGTAAATACCATCTAAATAAACCTGCAATCATGGGTGAATTCCTGAAATACATCGACTACGATCACAAGACCAGTTTCCTGAAGATGTTGAACCAGCAGAGGATGGAAGGGGACCACTGTGACGTTGTGGTTGTGGTGGAAAACGTTGAGTTCAGAGCTCACCGTTGTGTCCTGGCCGCCTGCAGCATCTACTTCAAGAAGCTGTTTAAAAAACAGAACGAGGTGGACAACTCCATCGTGGAGCTCGACTTCATCCGTTCAGACATCTTCGAGGAGGTCCTCAATTACATGTACACCGCCAGGCTCGCGGTCCGCAAAAAGGACATCAACCTCATGATGTCATCCGGACAGGTCCTGGGGATCACGTTCCTCGACAACCTGTGTTCGCAGAAACGTGAGCCCAACATGAAGCTGAGTCGTGAGAACCAGGCGCCAGGCGACGGTATGAGAGCCCAGGACGCCATCCTCAAAGAGCTGGCTatggaggaggtgaggaagaACAGCTTCTacgatggagggatggaggccATGGGCTCCGGGGGGCCTCACGGGGTCCCTCCTCACTTCGGCGGGAACATGTCTAAAGACCCCCACAGCGCCCACGGCTGgacctcctcgtcctcctcctccagcGATATGAAGCTTGACTACCTGCTGTACGGCCACCGCTCTGACGGCATCCACCCGGGAATGAAACCAGGCGGAGACGGCCCCAAGAAAGACAAGTCCCACCTGGCCCACCGTCCGTTCGCTTGCGAGGTGTGCCCCAAAACCTTTACCACCCAGGCCCACCTCAAAGAGCACCTGAAGATCCACACGGGCTTTAAACCGCACCGCTGCCTGGTCTGTGGCAAGGCGTTCATACGAGGGCCCGACTTAAAGCGGCACGAGAGGGTCCACAGCAACGAGAGACCCTTCGGATGCCAGATGTGTGAAAAGGCCTTCAAGCACAAGTCCCACCTGCGAGACCACGAGCGGCAGCACCGAGGGGAGAGGCCCTTCAACTGCGGCTCCTGTGACAAGGCGTTCATCAAAGCATCGGACCTGAAGCGCCACTGGAACACGATGCACAGCCAGCGCAGAACGCTGTCCCCCGCCGCCGCCGCCACCGCCGCCCCGGGCGGCATCCAGGGAGATGCCGACACGCAGAGCCAGAGGGACTGGAAGCTAGAGGCTGGGCCACATTCGTAAGGACGGActgttacacagacacacacacacacacacacaccatgcgtatatagtgacagacacacacacatacatgcactaACACTCATGaatacacatgtgcacacacacacacacaagcatccaTAAACACATGAATACTGGCCCTGTGATATGTACTGAGGTGTAACAATGAGAAGATGGTGGGATCATACCGTGTCCATTACTGTAATGACATAATGGGCATGTAGTAAATATGATCCTATTGAATTGTATTTTATTGAATTGTTTAGGTTTTTTGTTTTTTCCCCACTTCAtgtagaaaaataataataataataataatgtttaggCTACTATCTACTACGACGACCATTAATGTATAtttttcacatttaaaaaaaaaaaaaaaaaaacatttgttgctATTTAGACAGACAGGGTTCTTCTTATTATAACTTCTTATtataacttttatttattttactttattgAATATCAGTAAcatttaagtgttttttttttgttgtttaaccttactgtattttaagacaacaacaacaacaaaaattgtgATTCTCTGCATAACATTTTTGTTGTGTATATCTTTTTACATGTGGATCTTAAAATGGCTGTTTTTATTGTAATGATTGGTTGATGTTACACTGTAGGAGTCACCATTCTGCTTTTCATACATACAGGTTATACCAAAGTCTTGGGCCTTCGATAAGACAGCCGGGGTAACAGGTTAATACCATGTCGGTTCTGGAAATAAACCAACATTCCAAGTCAAAATTTCCATCCTCATTTTGGGGAAAATACAAATGGTGGAAAATTGGGAATTATTGGAATTTTCAGTTTGCTTGCGGAATTGGAATGGATTTGACCCCTGACCTTTGACAAGCAGTCTGAAGGAGGGCTGTTCATTGTCTGTTCAGCCCAAGCGGCATGAGTCCGACAAGATTTACTGTTATACAGTGTCACTAGCCGATCAGAGCGAGATACCACATCTGTATCAGTAGCCTATCAGTGAGAGATACCACATCTGTATCAGTAGCCTATCAGAGAGAGATACCACATCTGTATCACTAGCCTGTCATCAGAGAGAGATACCACATCTGTATCACTAGCCTGTCATCAGTGAGAGATACCACATCTGTATCACTAGCCTGTCATCAGAGAGAGATACCACATCTGTATCAGTAGCCTATCATCAGAGAGAGATACCACATCTGTATCACTAGCCTGTCATCAGAGAGAGATACCACATCTGTATCACTAGCCTGTCATCAGAGAGAGATACCACATCTGTATCACTAGCCTGTCATCAGAGAGAGATACCACATCTGTATCAGTAGCCTGTCATCAGAGAGAGATACCACATCTGTAGCTACCGTCAGAGAGCGATCGATACACCAcgtctgtatatactgtagcttgACTAGTTGCACAATTAAAATATTTAGGACACACAATTATGATATATGCACATATAAACGTTGTTCTCTTACACTTTGAAAATAAACCAACATTTGatgaatagattttttttttgggggggggatcaTTGTTATGATCTGATTTCTTTTGTTAGTACATGTTTTTGTTTGTACATGTTTTTTCATGAGGGCGTTCCTTTAGTATATGGTAATAGTTATGACTGTAACGATGTATATTTGTGTTAATACACACACATTCTATAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU861732 lncRNA upstream 3726 87679349 ~ 87684205 (+) True G758495
TU861761 lncRNA upstream 47514 87639536 ~ 87640417 (+) True G758520
TU861753 lncRNA upstream 52951 87633744 ~ 87634980 (+) True G758513
TU861751 lncRNA upstream 54387 87623329 ~ 87633544 (+) True G758512
TU861718 lncRNA upstream 140000 87547511 ~ 87547931 (+) True G758486
TU862216 lncRNA downstream 32926 87724669 ~ 87725814 (+) True G758860
TU862223 lncRNA downstream 35682 87727425 ~ 87727845 (+) True G758863
TU862237 lncRNA downstream 79258 87771001 ~ 87771761 (+) True G758877
TU862258 lncRNA downstream 101254 87792997 ~ 87796407 (+) False G758886
TU862257 lncRNA downstream 102315 87794058 ~ 87796407 (+) False G758886
XM_036986643.1 mRNA upstream 16827 87569072 ~ 87671104 (+) False LOC110512128
XM_036986644.1 mRNA upstream 16827 87569189 ~ 87671104 (+) True LOC110512128
XM_036986645.1 mRNA upstream 17036 87569072 ~ 87670895 (+) False LOC110512128
XM_036986647.1 mRNA upstream 26207 87569072 ~ 87661724 (+) False LOC110512128
XM_036986642.1 mRNA upstream 138093 87532950 ~ 87549838 (+) True LOC110519501
XM_036986650.1 mRNA downstream 54049 87745792 ~ 87775447 (+) True LOC110513441
XM_036986662.1 mRNA downstream 325477 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA downstream 325484 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA downstream 325713 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA downstream 335041 88026784 ~ 88059703 (+) True acss2l
TU861418 other upstream 753920 86933446 ~ 86934011 (+) True G758259
TU861389 other upstream 767422 86912176 ~ 86920509 (+) False ly97.3
TU861390 other upstream 767422 86912176 ~ 86920509 (+) False ly97.3
TU861391 other upstream 767422 86912176 ~ 86920509 (+) True ly97.3
TU861161 other upstream 1052471 86634784 ~ 86635460 (+) True G758045
TU861774 other downstream 25074 87716817 ~ 87717718 (+) True G758531
TU862226 other downstream 40551 87732294 ~ 87733139 (+) True G758866
TU862276 other downstream 183377 87875120 ~ 87876684 (+) True G758892
TU862389 other downstream 273949 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 300227 87991970 ~ 87995145 (+) True G758988

Expression Profile