RNA id: TU861724


Basic Information

Item Value
RNA id TU861724
length 855
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC110512127
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87687931 ~ 87691743 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaacaacaacaacaaaaattgtgATTCTCTGCATAACATTTTTGTTGTGTATATCTTTTTACATGTGGATCTTAAAATGGCTGTTTTTATTGTAATGATTGGTTGATGTTACACTGTAGGAGTCACCATTCTGCTTTTCATACATACAGGTTATACCAAAGTCTTGGGCCTTCGATAAGACAGCCGGGGTAACAGGTTAATACCATGTCGGTTCTGGAAATAAACCAACATTCCAAGTCAAAATTTCCATCCTCATTTTGGGGAAAATACAAATGGTGGAAAATTGGGAATTATTGGAATTTTCAGTTTGCTTGCGGAATTGGAATGGATTTGACCCCTGACCTTTGACAAGCAGTCTGAAGGAGGGCTGTTCATTGTCTGTTCAGCCCAAGCGGCATGAGTCCGACAAGATTTACTGTTATACAGTGTCACTAGCCGATCAGAGCGAGATACCACATCTGTATCAGTAGCCTATCAGTGAGAGATACCACATCTGTATCAGTAGCCTATCAGAGAGAGATACCACATCTGTATCACTAGCCTGTCATCAGAGAGAGATACCACATCTGTATCACTAGCCTGTCATCAGTGAGAGATACCACATCTGTATCACTAGCCTGTCATCAGAGAGAGATACCACATCTGTATCAGTAGCCTATCATCAGAGAGAGATACCACATCTATACCACATCTGTAGCTACCGTCAGAGAGCGATCGATACACCAcgtctgtatatactgtagcttgACTAGTTGCACAATTAAAATATTTAGGACACACAATTATGATATATGCACATATAAACGTTGTTCTCTTACACTTTGAAAATAAACCAACATTTGatgaatagattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU861732 lncRNA upstream 6385 87679349 ~ 87684205 (+) True G758495
TU861761 lncRNA upstream 50173 87639536 ~ 87640417 (+) True G758520
TU861753 lncRNA upstream 55610 87633744 ~ 87634980 (+) True G758513
TU861751 lncRNA upstream 57046 87623329 ~ 87633544 (+) True G758512
TU861718 lncRNA upstream 142659 87547511 ~ 87547931 (+) True G758486
TU862216 lncRNA downstream 33084 87724669 ~ 87725814 (+) True G758860
TU862223 lncRNA downstream 35840 87727425 ~ 87727845 (+) True G758863
TU862237 lncRNA downstream 79416 87771001 ~ 87771761 (+) True G758877
TU862258 lncRNA downstream 101412 87792997 ~ 87796407 (+) False G758886
TU862257 lncRNA downstream 102473 87794058 ~ 87796407 (+) False G758886
XM_036986643.1 mRNA upstream 19486 87569072 ~ 87671104 (+) False LOC110512128
XM_036986644.1 mRNA upstream 19486 87569189 ~ 87671104 (+) True LOC110512128
XM_036986645.1 mRNA upstream 19695 87569072 ~ 87670895 (+) False LOC110512128
XM_036986647.1 mRNA upstream 28866 87569072 ~ 87661724 (+) False LOC110512128
XM_036986642.1 mRNA upstream 140752 87532950 ~ 87549838 (+) True LOC110519501
XM_036986650.1 mRNA downstream 54207 87745792 ~ 87775447 (+) True LOC110513441
XM_036986662.1 mRNA downstream 325635 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA downstream 325642 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA downstream 325871 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA downstream 335199 88026784 ~ 88059703 (+) True acss2l
TU861418 other upstream 756579 86933446 ~ 86934011 (+) True G758259
TU861389 other upstream 770081 86912176 ~ 86920509 (+) False ly97.3
TU861390 other upstream 770081 86912176 ~ 86920509 (+) False ly97.3
TU861391 other upstream 770081 86912176 ~ 86920509 (+) True ly97.3
TU861161 other upstream 1055130 86634784 ~ 86635460 (+) True G758045
TU861774 other downstream 25232 87716817 ~ 87717718 (+) True G758531
TU862226 other downstream 40709 87732294 ~ 87733139 (+) True G758866
TU862276 other downstream 183535 87875120 ~ 87876684 (+) True G758892
TU862389 other downstream 274107 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 300385 87991970 ~ 87995145 (+) True G758988

Expression Profile