RNA id: XM_036986662.1


Basic Information

Item Value
RNA id XM_036986662.1
length 2523
RNA type mRNA
GC content 0.51
exon number 19
gene id acss2l
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88017220 ~ 88059703 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTAGATTTTCATTCTGACCCGAAGTCGCCCTAGAAAAAGACGCAATTGtctctacaagccagaatgttgaatacaatGATATGTACAGGGTGTACATGCTGTAGGTCCTTCTGATGACTGGAGGTGGAGATAAGtcagatagacagacagacgtactGTAGATAGAGCTATCAACGATGGTGGTCCCTGGCTCTCAACACATAGAGGACAAGATGTACCATCCTCCGGAGGGTTTGCAGAAGGATGCTCATGTGCCTGACTTCAACTGTTATCTGGAACTTTACAAGAAGTCTATTGAGGAGCCGGACGCATTCTGGAAAGAGGTCGCTAGTGATTTCTATTGGAAGAAACCTCCCACGGGTCAGATCCTGCAGTATAACTTCGACGTGACCAAAGGGAACATCTATGTGAAATGCATGGAGGGAGCCACAACTAACATGTGTTACAACGTCCTGGACAGGAACGTGAAGGACAAGAACCTTGGTGAACGAGTGGCGTTCTACTGGGAGGGGAACTCACCTGATCACCACGAGGCCATCACCTACGGTCAGCTGCTTGGACAGGTGTGCAGGTGTTCCAACACTCTGAAGCAGATGGGAGTGAGGAAGGGAGACAGGGTGGCCATCTACCTCCCTATGATTCCAGAGCTGGTGTACACCATGCTGGCCTGCACCAGGATAGGAGCTGTCCACTCCATCGTGtttgCAGGCTTCTCCGCTGAGTCTCTGTGTGAGAGGATCATGGATTCCCAGTGTAGTATCCTGGTGACTGCAGatgGTGTGTACAGAGGGGAGAAGTTGATCAACCTGAAACAGATAGCAGACGAGGCTCTGGAGAAATGTAGGGAGAAAGCATCCGCCACTGTTACACGATGTTTAGTAGTGAAACACCATGCACTGAGGACACAAGATGGAGATGTTGCCAACACATTGCAGaccccgTGGGATGCTGCGTGTGATGTGTGTTGGGAGgaggtgatgggacaggtctcAGAGCACTGTGAACCTGAGTGGCTGGATGCAGAGGATCCTCTCTTTATACTTTATACCAGCGGATCTACGGGCAAACCAAAGGGTGTCCTCCACACGGTAGCAGGCTACCTGCTCTACACCTCTCTGACCTTTAAGTATGTGTTTGACCACCAGCCAGACGATGTGTACTGGTGTACCGCAGATATAGGATGGATCACCGGGCACTCCTACATCACCTATGGACCCCTGGCCAACGGGGCTACCAGCGTACTGttTGAGGGTATTCCAGTCCATCCTCACGTTGGGCGTTTCTGGGAGGTGATTGAGAAGTACAGAGTGACCAAGTTCTACACAGCTCCCACAGCCATACGCCTCCTGATGAAGTACGGATTAGATCCAGTACAgaaGTACGACCTGTCATCGCTGAGGATTCTGGGTACTGTAGGTGAGCCCATCAACCCGGAGGCGTGGCATTGGTACCACGAGGTGATTGGTCAGAAGAGATGCCCTGTGGTGGACACCTTCTGGCAGACCGAGACGGGTGGCCATGTTTTAACTCCTTTACCTGCCGCTACACCTCTGAAACCTGGATCAGCTACGTTTCCTTTCTTTGGCGTGGAGCCTACCATACTGAACGAGCATGGAGAGGAactggagggagaggcagagggctATCTGGTGTTCCGTCGGCCCTGGCCTGGTATCATGCGTACCTTGTACGGAAACCAGGAGCGATTTGAGAACACTTACTTCAAGAAGTTCCCAGGTTTCTACGTGACCGGGGATGGCTGcaggagggatagagatggataCTACTGGATCGCAGGCAGGATAGATGACATGATCAACGTATCAGGTCACCTGTTGAGTACAGCGGAGGTAGAGGCATCTCTAACAGACCACGGAGCGGTGGCCGAGGCTGCTGTGGTCAGCAGACCCCACGCGGTCAAGGGGGAGTGTCTCTACTGTTTCGTTACTCTGAAGGACTGCAGAGAGTTCAACCGCACTCTGGTGGACGAACTCAAGAGACAAGTGAGGGAGAAGATTGGTCCGATCGCCACCCCAGACTTCATCCAGAATGCTCCTGGACTTCCTAAAACACGATCTGGTAAGATCATGAGGCGGGTCCTGAGGCAGATCGCCCGGAACGAGAAGGATCTAGGTGACCTTTCAACTATGGCTGACCCCAAGGTCGTAGAGGTCCTGTTCAACCACCGCTGTGAAACGGCCTCTTGAGGGGGCTGCATGTCAACACTACAGTAGCTTCCTCTCCTCGacacctcatctcctctctttgtctcctcATTTCCTCTATATCATCCACACCGATCTGAAAACTATGGAAGCCCATTCCTGCCACcaactcttaaaaaaaaaaaaaatgttttttaaaaataataGAACATACAGgatatatttcttaatttttAGCAGTATGTGCACATTTATTTCCATCTGTCCACGTTGCAGGGTGGCCGGAAGATGTGTGGCGAGCTGGCATTTACCCCAACACTTTTTCAATTcggtttaataaaaaatattgaCACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862362 lncRNA upstream 6601 88001546 ~ 88010619 (+) True G758954
TU862405 lncRNA upstream 18372 87997243 ~ 87998848 (+) True G758989
TU862374 lncRNA upstream 34924 87937191 ~ 87982296 (+) False G758965
TU862390 lncRNA upstream 51295 87959523 ~ 87965925 (+) False G758976
TU862386 lncRNA upstream 58821 87957906 ~ 87958399 (+) True G758974
TU862438 lncRNA downstream 12126 88071829 ~ 88072091 (+) True G759016
TU862439 lncRNA downstream 17537 88077240 ~ 88077597 (+) True G759017
TU862443 lncRNA downstream 18379 88078082 ~ 88080468 (+) False G759018
TU862442 lncRNA downstream 19027 88078730 ~ 88080468 (+) False G759018
TU862445 lncRNA downstream 19027 88078730 ~ 88080468 (+) True G759018
XM_036986650.1 mRNA upstream 241773 87745792 ~ 87775447 (+) True LOC110513441
XM_036986648.1 mRNA upstream 325477 87687931 ~ 87691743 (+) False LOC110512127
XM_036986649.1 mRNA upstream 325477 87687941 ~ 87691743 (+) False LOC110512127
XM_036986643.1 mRNA upstream 346116 87569072 ~ 87671104 (+) False LOC110512128
XM_036986644.1 mRNA upstream 346116 87569189 ~ 87671104 (+) True LOC110512128
XM_036986671.1 mRNA downstream 565738 88625441 ~ 88642762 (+) True LOC110510807
XM_036986676.1 mRNA downstream 586697 88646400 ~ 88662958 (+) False LOC110510805
XM_036986675.1 mRNA downstream 586699 88646402 ~ 88663381 (+) False LOC110510805
XM_036986673.1 mRNA downstream 586699 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA downstream 586700 88646403 ~ 88667320 (+) True LOC110510805
TU862403 other upstream 22075 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 45291 87965692 ~ 87971929 (+) True G758976
TU862276 other upstream 140536 87875120 ~ 87876684 (+) True G758892
TU862226 other upstream 284081 87732294 ~ 87733139 (+) True G758866
TU861774 other upstream 299502 87716817 ~ 87717718 (+) True G758531
TU862451 other downstream 22318 88082021 ~ 88106947 (+) False G759020
TU862454 other downstream 22318 88082021 ~ 88106947 (+) True G759020
TU862468 other downstream 49303 88109006 ~ 88110300 (+) True G759031
TU863171 other downstream 638271 88697974 ~ 88701419 (+) False G759556
TU863172 other downstream 638271 88697974 ~ 88701075 (+) False G759556

Expression Profile