RNA id: XM_036986668.1


Basic Information

Item Value
RNA id XM_036986668.1
length 6644
RNA type mRNA
GC content 0.58
exon number 17
gene id LOC110518901
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88077201 ~ 88331495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTTAATTATTCTAATCTGCTATGAAAAGTCAAATCCGACAAAAGATGTATCCCATCTAGTCATTACATACCGCAGAGATTGCAGATTTTCCTTGTCAGATATACGGAAGGAGTGGGAAAGGGCAAAAGACCGCGAGCAGCCGACACACGGACAGACCGGGGCccagagagcgagggggaggacGAGTCGTATCAGGGaataacaatacgactggatgCATTTATAGCCAAACCTTACAATAAGCAACACTGCAGATTCCTTCTGTCCCTCAGCggtttatttaggctgcaataaTCTCGTTTATTTCAGCGATTCCTTCAAGGAGACCGAGCGGAGCCACCGGGCTGCCGGTACCGTAGAGGGGAGTACAATGACAACCTGGTGAATGTAGCCGATGATATTTACCTAAACAGACCGAATGGAATAAAACCGCGAATAGCCTAAAGGACCGTGGTGCGCATCCCGGGAGTGATGAGAACAACGGGGAGACAGGGCTGTGTTTCTGCTGCTGTCGGCTGTCAAATGTATTATTTATGTGTGTCGTGGACTGATCATTTGTTGATCCAtcaaccccctcccctcctctacatATTCTCCACCGGTATCGTCGGAGTGTTGTAATATGGATCGTTCCAGTGGCTCTGGGACCAGCGAACCCACCAAACCGCCAAACCACCAGTTGGAGAAGAAACGGTTAAACCGAGCACCATCTCCGGCCAGGCCGTTCCTGAAGGATGTCCGCTCCTCGCCCAAACCAGCGGCTATCGTACCAAAATCCCCCAAACTGACCAAGCAGCAGCACTCCTCTTCTCCAGTGGCCTTATCATCCAATCAAAGCCGCATATCCAGGCGCACCCCAACCGGAGCGAAGGATAACAAACCAGCCACCGTGAAAAGTCACAGCACCAAGTCTTCGACAGTCACGAAGAAGACGGTTAAGGTCATTCAACATGCGGCGCTTGAACCTAAACCGACCACTGCAAGCGCCAGCAAACCGACCCCGGACAGCAGCACCAGCAGTCCACACCTCGCCCTCAAAGCCAAGAAGAGTAAAATAGCCACGCTGACCGCGTCTCACCACGGCCCACTCAGCCTTGGCTCCCCAATCCGCGTCCCAACCGGCGCTACCCCCCTCGGCAGCAGGGTCAGTCAGACCGACAGTAGCTCCGATCTCTCTGACTGTCCCTCCGAACCCCTATCCGACGAACAGCGCCTGGCCGCGGCCGCAAGCAGCGATGGGGAGTCGGGGGGCTCCGGGTTCAGCGACAGGGATCAGGTGGATCATCCTGTGCAGGCGGCAGCATCAGCGTCAGACGCGGCCAGAGCGGCAGGGGCTACTGCCGGTAGTGGTGTTGGTTCGTTGCGCACCGCGGAGGGTAGCCCCGCGGCTGCTGGGAAAGGCGGCATGTCTCAGGCTCCAGGACCAGGTGCTCACGGAGGAGAGGGGAGTAAACAGGAGAAAGCATCGACCACCGCACAATTGATAAAACTGGAATGCAGCAAAGAGATAATCGAGGAGGATTTATTGCGAGAAATAGAAGATCTCCGCTCTGAAAACGAGTACCTCAAGgatgAAGTGGAGGAGCTGCGTGCGGAGATGGAGGAAGTCCGGGACAGTTACCTGGAAGAGGAGGTGTACCAGGTGCAGGAGTTACGCAGGGAGCTGGACCGCTCCAATAAGAACTGTCGGATCCTCCAGTACCGTCTTCGTAAGGTGGAGCAGAAGAGCCTCAGAGTGGCCCAGACTGGACATGTAGATGGAGAGCTGCTACGCAACCTGGAACAGGATCTCAAGGTGGCCAAAGATGTGTCAGTGCGTCTGCACAACGAGCTGGAGAATGTAGAAGACAAGAGGACCAGGGCTGAAGATGAGAATGAGCTGCTGAGACAGAGGATCATCGAGGTGGAGATCTCTAAACAGGCTCTACACAATGAACTGGACAGAAATAaagagACCGCTCTACGGCGGAGAGGGAGCAGGGAAACCTTTAAGGACAAGAAGTTTCTGAATCAAGACGACAGTGCAGATCTCAGGTGCCAGCTCCAATTCTCTAAGGAAGAATCCACCCTCATGCGAAAGAAGATGGCCAAGctggggagggagaaggaagagctTGAGCAGGAGATACAGAAGTATAAGTCAGTCTACGGGGACGTGGACAGCCCTCTACCCCTGGCAGAGCTTGCAGGTGGTGGGCCACACAGCACCAGGGAGGCTGAGCTACGGCTCCGACTCAAACTGGTGGAGGAAGAGGCTAATATTCTGGGGAGGAAGATTGTTGAACTAGAGGTGGAGAACCGAGGCCTGCGGGCTGAGAACGAGGACATCCGCTGCCAGTACGAGAGGGACTGTTTCGGCCGGGAGCCCTTCAGCAGCATGCCCTCCTCCCCGTACGGCGGAGACGCTCTGGAGTCAGCCGGGGAGCTGCGACGCCACCTACAGTTTGTAGAGGAAGAGGCAGAACTTCTCCGCCGGTCCATCTCGGAGATCGAGGACCACAACAAACAGCTGACGTCAGAACTGAACCGCTTCAAGTTCGGCCCGAGAGACGAGGACGTCGATGTCGGAGTGATGCTGATGAAGACCGGTAATGGGGGTAACGGTGGCGGCGGGGGTAACGGGAGCGGTGTTGTGATGATGGAGGAGCTGAAGGCAGCCAGGATGCAGATCAACGAGCTCAGCGGGAAGGTGATGAAGCTGCAGTATGAGAACAGAGTTCTGATGTCCAACGTTCAGCGCTGTGACCTTGCCCAACACCTGGGCCTCCGCACCGGCTCCCCACGGGACAGCGATGCAGACAGCGACACCGGCCGCCGAGACGCCGCAGAGGAGGAAGAAACTGGGAGGCTCCTCCTTCTACACCCCAAGAGGGAGGGGCCTGTCGGCGGCGAGAGCGACTCGGAGGACCTGTTTGAGAAGACCACCACGACCTCTGGTTTCGGAAGTCACAAGCCCTCAGACGAGATCAGCGGGCTCAGCACCACGGAACTAGCCAACCTCAGACGAGAAGACCGTGAGACGTTCATGAACGTCAAACGAGAAGCAGAGCGTCTTGGGAAGACCGTAGACCGCCTCATTACCGACACGGACAGTCTGATCTACGAGGGAAAGATTATAGTAACGGGAGGGGACAGTCTCTGCATAGAGGGGTTCAGAGGACACAGTGGGGAGGGAAgcggagaggacagggggaacaCCACCACACTCCTCGAGTCCCTACAAGACTCGCAGGTCCTGGACACTATCAACACCCGAATGAAGGCCTTCAGGACAGAGCTCCATATCTTCATGGAGAAGGTGGATCACCTGGGAGACGGGCTAAGGGAGAGGGTAGGGGACCGGGATAGTGGGGATGACCTGTCGCCCATGCCCAACCTTACAGAGTCTAGCAGCTTCCTGTCAGGAGTCACATCCATGTCCCGGGATTCGCCCATCAGCACCCTGGGACGCGACCTGGTCACAGATTTCCAGGTTGAGGAACGGAGGCGGCTGGAGGTGCAGGGTGTGAGGCCCAGGGGGGGTCTGGATCTTACTGGCCTGCAGGCCCACGAGGCTCCCTGGGTCCAGGAAAGAACCCTACTGCAGCAGGAGGTCCGGTTGTTCAGACACAACACCATCGTCTTCTATATGAAGCTACGCTGGATCCTTATGCACTGGAGGCTGGGGAAGAGGACAGAGGCAGGGGAGGAGACCGCACACGCAGAGTATGAGAAGTTGGAGGGTATTCCAGAGCTGATCTTGgagcatggagagggagagacggagagagaggacagggacaggTCGTGTACCCAGCTACCCCAGAGAGACAGCCCCGAGCCTGGCCCCACAACCCAACTCCCCTCCACTGAACGCCTGCAGCACCAGACACAGgtggGTGAGAACCGTAGGGTGCTCCAAGCAGTGCGCTCCCTGTTAGAGGAGTTCAGGTTAGagttgagggaggaggagaacaggaggtgcCAGCTGCAGCAGATCTACGCTAATGACAAAGCTTCCTGGGAGGTCAAATGGGCAGAGATGAAGTGTCACGTCGCTCAgCtggaagaggagagacgagaagagaaaggagaggtgagaggagaggacagaggggagatgcagggagtaggaggaggagacaaagactgggcctttaaacaggaGCGAGAGGAGCACCGTTGCCTCCTGGCAGAGAGCCACAGCACCTCCCTGAACCTCCACTGGAAGCTGCAGcagggagagaagaggtgggggagggagaggagaggcctaCTGGAACGCTTCGACCAGGAGAGACAAGAGTGGGACAGCAACATGAGAAACATGCACCACAagatggagaggCTGCAGAGAGAGCTGAATGTCCGACAGAGCAGTGAGGGCTCACCCTCCGACGTCAAAGACGGGGCGACGGCAGGAGGACACAGGGGTgtcttttcccctcaggagagcCCATGTAAGGTCCCTCGCTCCCCTCGGTCACCCCGCTCCCCTCGCTCTGCCACTTCCGGCCCTGTTTCCCTCCCCACCCGCTCCCACTCGGACTCAGAGGCCCATGAAGAGCAGGGGGCTGTAGTGAGGGTCAGAGGCCCAACAGAGAACATTTTCCTGGACGCTCTGACGCTAGACTCCCTTGGTAGCCTGGAGGTCCCACTTCCCAGCAGACTGGACTCTGACAAGAGGTTCCCCTGTATGAACCAGGCTCTGAATGAGATCCCAGACATAGAGGACCCAATGtaccaggaggaagaggaggaggaggaagagatgggcTTTGGCAGTCTGCTCAGGGCTAAGTCAGTCTGTTCTATGAGTGACTTCCAGCGTCTGATGGACAGCTCTCCTTTCCTGCCTGACAAGAGTCGTCATGGTGACTGTGGCCGTGATGACGTGACCCCACCCCTTTCACCTGATGACCTGAAGTACATAGAGGAGTTCAACAGTAAGGGGTGGGGCTTTCCTGTCCCTGGCCCCTCCCCTACACCAGGCCACCACACCCCCACACCCATGGAAGCCTGGGCAGAACGGCCCACGTCAGTTCCAGAACCATTCCAGCCAGCCTTGTGGTTCCTGACAACCAGTGCTACGCTTACTACTAACACCCTGTCCAGCCCTGAACCCCATCCCCTCTGCCAGCACTCCCCTCTCAGGGGTAACGGGGGTAACAGAGGAGGGGGGGCAAGTGTCCATGTCTCCCACAGCCCCACCCGACCCCCAGGAACCCCTGAACAGGACTACATGTACCCCAAAGGGACCAAAGGGCGAGGGGGTGGCGGTGAGGTGGGGGATCCCCCTGGGGTAGGGGGACCAGACGAGGTATTTGGTAATGGTAGGTGGCCCTCCACCTGTCATAAGGAGTTATTAGAGGGTGGGAGTGGACTGGGAGGCGGACTTAGGGTTCCGTCTGGCGTGGGCCCCATCCCCACGGTGGGGTACGCCTCATCTCTGGAGCTGCAGCTGTCACGGAACCTCAGTGATGACATGAAGGAGGTGGCCTTCTCCGTACGGAACTACCGCTCAGGCCCTGGTACCTCGGACCTCCTGGAGCAACACAGACAGCTCCGAGACACGGCGTGTCAAACCAACGGTTTCACTACTCGGGGAACCCAGACCACCCAGACCATCAGTGTGGGCTTACAAACTGACATCCTCCGCAACCTCACCAGCTCCCCCCACCGCTGCCTCACCCCTATAGGAGGAGGCTccacccccatctcctccccctccagaAACATCCGCAAGATACAGTACTCTCCTGTAGTCCAGTCCAAGTTCGAGCGGACATGTTGTTCTCCTAAGTACGGTTCTCCTAAGCTCCAGAGGAAGTTGTCGACATCATCGAAGGCTGACCTCCCTGTGGGGGCCTCCTCCAGCTCCACGACCGGCCCCAGGGTTCCGACTCCCACCACCCCCCAGAAGGGAGCCTCTGAGTCGGCCTGGGCTCGTTCCACCACCACCAGGGACTCTCCCGTCCACACCACCATTAACGACGGCCTGTCCAGCCTCTTCAACATCATAGACCACACCCCCGTAGCTTACGAACCCCTGCAGTCCAAATTCACCAAGTCCCCAAGCCGCACCCGCCCCGCTCCCCCTGACCCCTCACCTCCCGGGGGGCCAGGGGTACCCAGCCTACCACCCTCAGACCCCAGGTCCCTTGGAGCAGCCCAGGAGTTCCTGAGGAATGTCCGCGGGCGTTCTCCCAGCCCGGTGCAGCTGATAGTAGACACCCAGGGAGGGCCGGGgggaacaggaggggagaggacaccGGAGGTGGTCAGTATACGCCAGGACCTGTCTGCCCCGCCTGGATACACGCTGGCAGAGAACGCAGCCCGTCTGCTGAACAAGAAGCTGTTGGAACAGAGCttcagggaggagaagagactggGGTCTGCCGGCCAGAGCAGAGAGGGGAGGCATGGAGAAGGAGACAGGAACCAGGCGGGGTGTATGGAGTCCCGCCTGCTCTGACTCCGGGACCTGTCTCCAGTCCCTCGTCTCCTCAGTCCTGCTTCCCTGGCCTGGATCCCTGCTCTACTGCTTCATAGGATTCTTCTCCAGACCTGCTTCCTAATCTCCTTGCCCTCAGCCTCATTCCGGATTCCCTACTACccaccccatctcctctcccgCTTTTCAATAAATACATTGGTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862754 lncRNA downstream 219 88076763 ~ 88076982 (-) True G759242
TU862737 lncRNA downstream 12550 88060693 ~ 88064651 (-) True G759225
TU862719 lncRNA downstream 94089 87982166 ~ 87983112 (-) True G759209
TU862690 lncRNA downstream 163771 87910408 ~ 87913430 (-) True G759184
TU862689 lncRNA downstream 168871 87906440 ~ 87908330 (-) False G759184
TU862904 lncRNA upstream 1602 88333097 ~ 88334683 (-) True G759346
TU862909 lncRNA upstream 6999 88338494 ~ 88341360 (-) True G759349
TU862934 lncRNA upstream 38507 88370002 ~ 88370786 (-) False G759364
TU862936 lncRNA upstream 38507 88370002 ~ 88370500 (-) True G759364
TU862943 lncRNA upstream 42749 88374244 ~ 88374566 (-) True G759371
XM_021614144.2 mRNA downstream 60098 88002853 ~ 88017103 (-) True LOC110530857
XM_021614143.2 mRNA downstream 60102 88002853 ~ 88017099 (-) False LOC110530857
XM_036986656.1 mRNA downstream 76081 87944259 ~ 88001120 (-) False LOC110531046
XM_036986657.1 mRNA downstream 76081 87944259 ~ 88001120 (-) False LOC110531046
XM_036986658.1 mRNA downstream 76081 87944259 ~ 88001120 (-) True LOC110531046
XM_036986670.1 mRNA upstream 10960 88342455 ~ 88362306 (-) True LOC110509139
XM_036986896.1 mRNA upstream 48442 88379937 ~ 88570992 (-) True LOC110531049
XM_036986685.1 mRNA upstream 339970 88671465 ~ 88694158 (-) False LOC110530889
XM_036986684.1 mRNA upstream 339970 88671465 ~ 88710355 (-) False LOC110530889
XM_036986679.1 mRNA upstream 339970 88671465 ~ 88715571 (-) False LOC110530889
TU862683 other downstream 134379 87940904 ~ 87942822 (-) True LOC110530858
TU860865 other downstream 1845009 86230374 ~ 86232192 (-) False G757788
TU860867 other downstream 1845009 86230374 ~ 86232192 (-) False G757788
TU860868 other downstream 1845009 86230374 ~ 86232192 (-) False G757788
TU860438 other downstream 2213314 85863011 ~ 85863887 (-) True G757422
TU863003 other upstream 99709 88431204 ~ 88443468 (-) False G759421
TU863742 other upstream 204145 88535640 ~ 88536047 (-) True G759982
TU863763 other upstream 332109 88663604 ~ 88665140 (-) False G759998
TU863860 other upstream 371496 88702991 ~ 88704054 (-) True G760051
TU863910 other upstream 496489 88827984 ~ 88830811 (-) False LOC110530888

Expression Profile