RNA id: XM_036986665.1


Basic Information

Item Value
RNA id XM_036986665.1
length 6923
RNA type mRNA
GC content 0.58
exon number 17
gene id LOC110518901
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88077201 ~ 88331495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTAATTATTCTAATCTGCTATGAAAAGTCAAATCCGACAAAAGATGTATCCCATCTAGTCATTACATACCGCAGAGATTGCAGATTTTCCTTGTCAGATATACGGAAGGAGTGGGAAAGGGCAAAAGACCGCGAGCAGCCGACACACGGACAGACCGGGGCccagagagcgagggggaggacGAGTCGTATCAGGGaataacaatacgactggatgCATTTATAGCCAAACCTTACAATAAGCAACACTGCAGATTCCTTCTGTCCCTCAGCggtttatttaggctgcaataaTCTCGTTTATTTCAGCGATTCCTTCAAGGAGACCGAGCGGAGCCACCGGGCTGCCGGTACCGTAGAGGGGAGTACAATGACAACCTGGTGAATGTAGCCGATGATATTTACCTAAACAGACCGAATGGAATAAAACCGCGAATAGCCTAAAGGACCGTGGTGCGCATCCCGGGAGTGATGAGAACAACGGGGAGACAGGGCTGTGTTTCTGCTGCTGTCGGCTGTCAAATGTATTATTTATGTGTGTCGTGGACTGATCATTTGTTGATCCAtcaaccccctcccctcctctacatATTCTCCACCGGTATCGTCGGAGTGTTGTAATATGGATCGTTCCAGTGGCTCTGGGACCAGCGAACCCACCAAACCGCCAAACCACCAGTTGGAGAAGAAACGGTTAAACCGAGCACCATCTCCGGCCAGGCCGTTCCTGAAGGATGTCCGCTCCTCGCCCAAACCAGCGGCTATCGTACCAAAATCCCCCAAACTGACCAAGCAGCAGCACTCCTCTTCTCCAGTGGCCTTATCATCCAATCAAAGCCGCATATCCAGGCGCACCCCAACCGGAGCGAAGGATAACAAACCAGCCACCGTGAAAAGTCACAGCACCAAGTCTTCGACAGTCACGAAGAAGACGGTTAAGGTCATTCAACATGCGGCGCTTGAACCTAAACCGACCACTGCAAGCGCCAGCAAACCGACCCCGGACAGCAGCACCAGCAGTCCACACCTCGCCCTCAAAGCCAAGAAGAGTAAAATAGCCACGCTGACCGCGTCTCACCACGGCCCACTCAGCCTTGGCTCCCCAATCCGCGTCCCAACCGGCGCTACCCCCCTCGGCAGCAGGGTCAGTCAGACCGACAGTAGCTCCGATCTCTCTGACTGTCCCTCCGAACCCCTATCCGACGAACAGCGCCTGGCCGCGGCCGCAAGCAGCGATGGGGAGTCGGGGGGCTCCGGGTTCAGCGACAGGGATCAGGTGGATCATCCTGTGCAGGCGGCAGCATCAGCGTCAGACGCGGCCAGAGCGGCAGGGGCTACTGCCGGTAGTGGTGTTGGTTCGTTGCGCACCGCGGAGGGTAGCCCCGCGGCTGCTGGGAAAGGCGGCATGTCTCAGGCTCCAGGACCAGGTGCTCACGGAGGAGAGGGGAGTAAACAGGAGAAAGCATCGACCACCGCACAATTGATAAAACTGGAATGCAGCAAAGAGATAATCGAGGAGGATTTATTGCGAGAAATAGAAGATCTCCGCTCTGAAAACGAGTACCTCAAGgatgAAGTGGAGGAGCTGCGTGCGGAGATGGAGGAAGTCCGGGACAGTTACCTGGAAGAGGAGGTGTACCAGGTGCAGGAGTTACGCAGGGAGCTGGACCGCTCCAATAAGAACTGTCGGATCCTCCAGTACCGTCTTCGTAAGGTGGAGCAGAAGAGCCTCAGAGTGGCCCAGACTGGACATGTAGATGGAGAGCTGCTACGCAACCTGGAACAGGATCTCAAGGTGGCCAAAGATGTGTCAGTGCGTCTGCACAACGAGCTGGAGAATGTAGAAGACAAGAGGACCAGGGCTGAAGATGAGAATGAGCTGCTGAGACAGAGGATCATCGAGGTGGAGATCTCTAAACAGGCTCTACACAATGAACTGGACAGAAATAaagagACCGCTCTACGGCGGAGAGGGAGCAGGGAAACCTTTAAGGACAAGAAGTTTCTGAATCAAGACGACAGTGCAGATCTCAGGTGCCAGCTCCAATTCTCTAAGGAAGAATCCACCCTCATGCGAAAGAAGATGGCCAAGctggggagggagaaggaagagctTGAGCAGGAGATACAGAAGTATAAGTCAGTCTACGGGGACGTGGACAGCCCTCTACCCCTGGCAGAGCTTGCAGGTGGTGGGCCACACAGCACCAGGGAGGCTGAGCTACGGCTCCGACTCAAACTGGTGGAGGAAGAGGCTAATATTCTGGGGAGGAAGATTGTTGAACTAGAGGTGGAGAACCGAGGCCTGCGGGCTGAGAACGAGGACATCCGCTGCCAGTACGAGAGGGACTGTTTCGGCCGGGAGCCCTTCAGCAGCATGCCCTCCTCCCCGTACGGCGGAGACGCTCTGGAGTCAGCCGGGGAGCTGCGACGCCACCTACAGTTTGTAGAGGAAGAGGCAGAACTTCTCCGCCGGTCCATCTCGGAGATCGAGGACCACAACAAACAGCTGACGTCAGAACTGAACCGCTTCAAGTTCGGCCCGAGAGACGAGGACGTCGATGTCGGAGTGATGCTGATGAAGACCGGTAATGGGGGTAACGGTGGCGGCGGGGGTAACGGGAGCGGTGTTGTGATGATGGAGGAGCTGAAGGCAGCCAGGATGCAGATCAACGAGCTCAGCGGGAAGGTGATGAAGCTGCAGTATGAGAACAGAGTTCTGATGTCCAACGTTCAGCGCTGTGACCTTGCCCAACACCTGGGCCTCCGCACCGGCTCCCCACGGGACAGCGATGCAGACAGCGACACCGGCCGCCGAGACGCCGCAGAGGAGGAAGAAACTGGGAGGCTCCTCCTTCTACACCCCAAGAGGGAGGGGCCTGTCGGCGGCGAGAGCGACTCGGAGGACCTGTTTGAGAAGACCACCACGACCTCTGGTTTCGGAAGTCACAAGCCCTCAGACGAGATCAGCGGGCTCAGCACCACGGAACTAGCCAACCTCAGACGAGAAGACCGTGAGACGTTCATGAACGTCAAACGAGAAGCAGAGCGTCTTGGGAAGACCGTAGACCGCCTCATTACCGACACGGACAGTCTGATCTACGAGGGAAAGATTATAGTAACGGGAGGGGACAGTCTCTGCATAGAGGGGTTCAGAGGACACAGTGGGGAGGGAAgcggagaggacagggggaacaCCACCACACTCCTCGAGTCCCTACAAGACTCGCAGGTCCTGGACACTATCAACACCCGAATGAAGGCCTTCAGGACAGAGCTCCATATCTTCATGGAGAAGGTGGATCACCTGGGAGACGGGCTAAGGGAGAGGGTAGGGGACCGGGATAGTGGGGATGACCTGTCGCCCATGCCCAACCTTACAGAGTCTAGCAGCTTCCTGTCAGGAGTCACATCCATGTCCCGGGATTCGCCCATCAGCACCCTGGGACGCGACCTGGTCACAGATTTCCAGGTTGAGGAACGGAGGCGGCTGGAGGTGCAGGGTGTGAGGCCCAGGGGGGGTCTGGATCTTACTGGCCTGCAGGCCCACGAGGCTCCCTGGGTCCAGGAAAGAACCCTACTGCAGCAGGAGGTCCGGTTGTTCAGACACAACACCATCGTCTTCTATATGAAGCTACGCTGGATCCTTATGCACTGGAGGCTGGGGAAGAGGACAGAGGCAGGGGAGGAGACCGCACACGCAGAGTATGAGAAGTTGGAGGGTATTCCAGAGCTGATCTTGgagcatggagagggagagacggagagagaggacagggacaggTCGTGTACCCAGCTACCCCAGAGAGACAGCCCCGAGCCTGGCCCCACAACCCAACTCCCCTCCACTGAACGCCTGCAGCACCAGACACAGgtggGTGAGAACCGTAGGGTGCTCCAAGCAGTGCGCTCCCTGTTAGAGGAGTTCAGGTTAGagttgagggaggaggagaacaggaggtgcCAGCTGCAGCAGATCTACGCTAATGACAAAGCTTCCTGGGAGGTCAAATGGGCAGAGATGAAGTGTCACGTCGCTCAgCtggaagaggagagacgagaagagaaaggagaggtgagaggagaggacagaggggagatgcagggagtaggaggaggagacaaagactgggcctttaaacaggaGCGAGAGGAGCACCGTTGCCTCCTGGCAGAGAGCCACAGCACCTCCCTGAACCTCCACTGGAAGCTGCAGcagggagagaagaggtgggggagggagaggagaggcctaCTGGAACGCTTCGACCAGGAGAGACAAGAGTGGGACAGCAACATGAGAAACATGCACCACAagatggagaggCTGCAGAGAGAGCTGAATGTCCGACAGAGCAGTGAGGGCTCACCCTCCGACGTCAAAGACGGGGCGACGGCAGGAGGACACAGGGGTgtcttttcccctcaggagagcCCATGTAAGGTCCCTCGCTCCCCTCGGTCACCCCGCTCCCCTCGCTCTGCCACTTCCGGCCCTGTTTCCCTCCCCACCCGCTCCCACTCGGACTCAGAGGCCCATGAAGAGCAGGGGGCTGTAGTGAGGGTCAGAGGCCCAACAGAGAACATTTTCCTGGACGCTCTGACGCTAGACTCCCTTGGTAGCCTGGAGGTCCCACTTCCCAGCAGACTGGACTCTGACAAGAGGTTCCCCTGTATGAACCAGGCTCTGAATGAGATCCCAGACATAGAGGACCCAATGtaccaggaggaagaggaggaggaggaagagatgggcTTTGGCAGTCTGCTCAGGGCTAAGTCAGTCTGTTCTATGAGTGACTTCCAGCGTCTGATGGACAGCTCTCCTTTCCTGCCTGACAAGAGTCGTCATGGTGACTGTGGCCGTGATGACGTGACCCCACCCCTTTCACCTGATGACCTGAAGTACATAGAGGAGTTCAACAGTAAGGGGTGGGGCTTTCCTGTCCCTGGCCCCTCCCCTACACCAGGCCACCACACCCCCACACCCATGGAAGCCTGGGCAGAACGGCCCACGTCAGAACCATTCCAGCCAGCCTTGTGGTTCCTGACAACCAGTGCTACGCTTACTACTAACACCCTGTCCAGCCCTGAACCCCATCCCCTCTGCCAGCACTCCCCTCTCAGGGGTAACGGGGGTAACAGAGGAGGGGGGGCAAGTGTCCATGTCTCCCACAGCCCCACCCGACCCCCAGGAACCCCTGAACAGGACTACATGTACCCCAAAGGGACCAAAGGGCGAGGGGGTGGCGGTGAGGTGGGGGATCCCCCTGGGGTAGGGGGACCAGACGAGGTATTTGGTAATGGTAGGTGGCCCTCCACCTGTCATAAGGAGTTATTAGAGGGTGGGAGTGGACTGGGAGGCGGACTTAGGGTTCCGTCTGGCGTGGGCCCCATCCCCACGGTGGGGTACGCCTCATCTCTGGAGCTGCAGCTGTCACGGAACCTCAGTGATGACATGAAGGAGGTGGCCTTCTCCGTACGGAACTACCGCTCAGGCCCTGGTACCTCGGACCTCCTGGAGCAACACAGACAGCTCCGAGACACGGCGTGTCAAACCAACGGTTTCACTACTCGGGGAACCCAGACCACCCAGACCATCAGTGTGGGCTTACAAACTGACATCCTCCGCAACCTCACCAGCTCCCCCCACCGCTGCCTCACCCCTATAGGAGGAGGCTccacccccatctcctccccctccagaAACATCCGCAAGATACAGTACTCTCCTGTAGTCCAGTCCAAGTTCGAGCGGACATGTTGTTCTCCTAAGTACGGTTCTCCTAAGCTCCAGAGGAAGTTGTCGACATCATCGAAGGCTGACCTCCCTGTGGGGGCCTCCTCCAGCTCCACGACCGGCCCCAGGGTTCCGACTCCCACCACCCCCCAGAAGGGAGCCTCTGAGTCGGCCTGGGCTCGTTCCACCACCACCAGGGACTCTCCCGTCCACACCACCATTAACGACGGCCTGTCCAGCCTCTTCAACATCATAGACCACACCCCCGTAGCTTACGAACCCCTGCAGTCCAAATTCACCAAGTCCCCAAGCCGCACCCGCCCCGCTCCCCCTGACCCCTCACCTCCCGGGGGGCCAGGGGTACCCAGCCTACCACCCTCAGACCCCAGGTCCCTTGGAGCAGCCCAGGAGTTCCTGAGGAATGTCCGCGGGCGTTCTCCCAGCCCGGTGCAGCTGATAGTAGACACCCAGGGAGGGCCGGGgggaacaggaggggagaggacaccGGAGGTGGTCAGTATACGCCAGGACCTGTCTGCCCCGCCTGGATACACGCTGGCAGAGAACGCAGCCCGTCTGCTGAACAAGAAGCTGTTGGAACAGAGCttcagggaggagaagagactggGGTCTGCCGGCCAGAGCAGAGAGGGGAGGCATGGAGAAGGAGACAGGAACCAGGCGGGGTGTATGGAGGACCTCCCTCGCTCCCCGGTGGCTCCGCCCCTGGAGTCGTGTTTCCTGCGCCCGGCGAGGCCAGCCAACCGCCGCCCCCCCTCCCGCTGGGCAGCCCCCTCCTCCCCCCGAGGCTGGCTAGACGTCACAgaacgaaggttcaccttccccATGGTGACTGGGACCAgtaagactgggactgggaccaCCTCTATACCAGACCTGGATGAGACTGGACCAGCAGAATCACAACAGGAACAATCACCATACCCCTGTTCTCCTTAACTCCCTCTTTACTCgctccactctctttctcaccaTACCCCAGCCAGTACCTCAGACCCATCTTTCAtagtcctcctctctactccctctcctccctcctgcttCGCTCCTGATGGAACTGtccacactctctcctcttctccactcctcctcttctccactcctccctactcctcctcttctccactcctacTTACTtctccctactcctctcctccactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862762 lncRNA downstream 4524 88080980 ~ 88081384 (-) False G759246
TU862763 lncRNA downstream 4524 88081010 ~ 88081384 (-) True G759246
TU862756 lncRNA downstream 5450 88078702 ~ 88080458 (-) False G759243
TU862757 lncRNA downstream 5450 88078702 ~ 88080458 (-) False G759243
TU862758 lncRNA downstream 5450 88078702 ~ 88080458 (-) True G759243
TU862904 lncRNA upstream 1603 88333097 ~ 88334683 (-) True G759346
TU862909 lncRNA upstream 7000 88338494 ~ 88341360 (-) True G759349
TU862934 lncRNA upstream 38508 88370002 ~ 88370786 (-) False G759364
TU862936 lncRNA upstream 38508 88370002 ~ 88370500 (-) True G759364
TU862943 lncRNA upstream 42750 88374244 ~ 88374566 (-) True G759371
XM_021614144.2 mRNA downstream 68805 88002853 ~ 88017103 (-) True LOC110530857
XM_021614143.2 mRNA downstream 68809 88002853 ~ 88017099 (-) False LOC110530857
XM_036986656.1 mRNA downstream 84788 87944259 ~ 88001120 (-) False LOC110531046
XM_036986670.1 mRNA upstream 10961 88342455 ~ 88362306 (-) True LOC110509139
XM_036986896.1 mRNA upstream 48443 88379937 ~ 88570992 (-) True LOC110531049
XM_036986685.1 mRNA upstream 339971 88671465 ~ 88694158 (-) False LOC110530889
XM_036986684.1 mRNA upstream 339971 88671465 ~ 88710355 (-) False LOC110530889
XM_036986679.1 mRNA upstream 339971 88671465 ~ 88715571 (-) False LOC110530889
TU862683 other downstream 143086 87940904 ~ 87942822 (-) True LOC110530858
TU860865 other downstream 1853716 86230374 ~ 86232192 (-) False G757788
TU860867 other downstream 1853716 86230374 ~ 86232192 (-) False G757788
TU860868 other downstream 1853716 86230374 ~ 86232192 (-) False G757788
TU860438 other downstream 2222021 85863011 ~ 85863887 (-) True G757422
TU863003 other upstream 99710 88431204 ~ 88443468 (-) False G759421
TU863742 other upstream 204146 88535640 ~ 88536047 (-) True G759982
TU863763 other upstream 332110 88663604 ~ 88665140 (-) False G759998
TU863860 other upstream 371497 88702991 ~ 88704054 (-) True G760051
TU863910 other upstream 496490 88827984 ~ 88830811 (-) False LOC110530888

Expression Profile