RNA id: XM_036986676.1


Basic Information

Item Value
RNA id XM_036986676.1
length 1189
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC110510805
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88646400 ~ 88667320 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTCTAAAAAGCGCCCCCCCAGAACTCAACCGCTCACCAATCGACCGCTTGATTGGAGGAGATACGGCTATCCGCCGCGGTCGGAtctttgaatttaaaaaaaaatattattattattataggccTATACGGTATTTATATTACATTTTGCACAATGCGATGAGAACGTCACGCAGGCATTGATATTTAGGTTTGAGGATAATAATAAAAAAGACGATGCCTGGTGAAGCGCGGCTCCATCAGTGCGCCTCTATTGCAGGTCATCTGAAAACAACAATAGATATATCATGTCGTGTTTGAGCGTCGCATGCAGCGCTGTTATTGTCCTGTTCGGAGCGGTTTGCAGCGTTTTCATATTCTGTGAGTATCTGATTTATTACGCCGCGATATTACAGTGCGGTTGGCCTGGGATCGACCATGGTGCCCCGGCGAGTGAGAGGAGCGCAGACGGCCAACCAGAGCCCGAGGTTCTCCGCGCTATGGTGCTGTCAGACACGCACCTCCTCGGCGCTGTCGGAGGGCACTGGTTCGACAAACTGCGAAGGGAATGGCAGATGGAACGAGCTTTCCAGACCGCCCTGGCCCTGCTCCGACCTGAGGTCGTCTTTATACTGGGGGATGTGTTCGATGAGGGGAAATGGAGCTCTCCGAAGAACTGGGAGGATGATGTCTGTCGTTTCCAGAAGATGTTTAGACATCCCAGTGACACAGAGCTGGTAGTTCTGGTTGGAAACCACGACATCGGCTTCCACTACGAAATGGACTGGTTCAAGTTACAACGCTTTGAGAAGGCCTTCAATACCACCTCCACCAGAATGGTCACCAAGAAAGGAGTGAACTTTCTGTTGGTCAACAGCGTGGCGTTGCATGGTGACGGTTGTCCTATCTGCCAATCAGTGGAGAAACAGCTTCACACACTGTCCAGGGACCTCAACTGTTCACTACTACAGAATTCTGAGTCCAGAATTATAAGAGAATACTGCCAAGACGCGTGGACCTATCCTTCTACAACACCTATCATCCTGCAGCATTACCCTCTTTACCGGGTGAGTGATGCGGGCTGTACGGGTCGGGATGCTGCTCCTCCTGAAGAGCGCCACCTGCTGTTCAGAGAGAAGTACGACGTGCTGTCTCAGGAGGCCTCTCACAGGCTGCTGCAGTGGTTTTCATTAGAGTGGTGATCTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863141 lncRNA upstream 10676 88634873 ~ 88635724 (+) False G759533
TU863142 lncRNA upstream 10676 88635369 ~ 88635724 (+) True G759533
TU863120 lncRNA upstream 41779 88603996 ~ 88604621 (+) True G759516
TU863107 lncRNA upstream 48670 88591342 ~ 88597730 (+) True G759509
TU863092 lncRNA upstream 89539 88556144 ~ 88556861 (+) True G759496
TU863169 lncRNA downstream 31520 88694478 ~ 88696111 (+) True G759555
TU863174 lncRNA downstream 36716 88699674 ~ 88700171 (+) True G759556
TU863179 lncRNA downstream 42440 88705398 ~ 88706202 (+) True G759560
TU863085 lncRNA downstream 43376 88706334 ~ 88707776 (+) True G759489
TU863187 lncRNA downstream 138533 88801491 ~ 88802329 (+) True G759567
XM_036986671.1 mRNA upstream 3638 88625441 ~ 88642762 (+) True LOC110510807
XM_036986662.1 mRNA upstream 586697 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA upstream 586697 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA upstream 586697 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA upstream 586697 88026784 ~ 88059703 (+) True acss2l
XR_005052997.1 mRNA downstream 223876 88886834 ~ 88903834 (+) False LOC118965580
XM_021614153.2 mRNA downstream 411666 89074624 ~ 89094403 (+) False slc25a24l
XM_021614152.2 mRNA downstream 411667 89074625 ~ 89094403 (+) False slc25a24l
XM_036986711.1 mRNA downstream 431878 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA downstream 431878 89094836 ~ 89113049 (+) False fubp1
TU862468 other upstream 536100 88109006 ~ 88110300 (+) True G759031
TU862451 other upstream 539453 88082021 ~ 88106947 (+) False G759020
TU862454 other upstream 539453 88082021 ~ 88106947 (+) True G759020
TU862403 other upstream 651255 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 674471 87965692 ~ 87971929 (+) True G758976
TU863171 other downstream 35016 88697974 ~ 88701419 (+) False G759556
TU863172 other downstream 35016 88697974 ~ 88701075 (+) False G759556
TU863230 other downstream 198121 88861079 ~ 88861828 (+) False G759598
TU863232 other downstream 198321 88861279 ~ 88861828 (+) True G759598
TU863313 other downstream 417607 89080565 ~ 89094340 (+) False slc25a24l

Expression Profile