RNA id: XM_036986673.1


Basic Information

Item Value
RNA id XM_036986673.1
length 4912
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110510805
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88646400 ~ 88667320 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTAAAAAGCGCCCCCCCAGAACTCAACCGCTCACCAATCGACCGCTTGATTGGAGGAGATACGGCTATCCGCCGCGGTCGGAtctttgaatttaaaaaaaaatattattattattataggccTATACGGTATTTATATTACATTTTGCACAATGCGATGAGAACGTCACGCAGGCATTGATATTTAGGTTTGAGGATAATAATAAAAAAGACGATGCCTGGTGAAGCGCGGCTCCATCAGTGCGCCTCTATTGCAGGTCATCTGAAAACAACAATAGATATATCATGTCGTGTTTGAGCGTCGCATGCAGCGCTGTTATTGTCCTGTTCGGAGCGGTTTGCAGCGTTTTCATATTCTGTGAGTATCTGATTTATTACGCCGCGATATTACAGTGCGGTTGGCCTGGGATCGACCATGGTGCCCCGGCGAGTGAGAGGAGCGCAGACGGCCAACCAGAGCCCGAGGTTCTCCGCGCTATGGTGCTGTCAGACACGCACCTCCTCGGCGCTGTCGGAGGGCACTGGTTCGACAAACTGCGAAGGGAATGGCAGATGGAACGAGCTTTCCAGACCGCCCTGGCCCTGCTCCGACCTGAGGTCGTCTTTATACTGGGGGATGTGTTCGATGAGGGGAAATGGAGCTCTCCGAAGAACTGGGAGGATGATGTCTGTCGTTTCCAGAAGATGTTTAGACATCCCAGTGACACAGAGCTGGTAGTTCTGGTTGGAAACCACGACATCGGCTTCCACTACGAAATGGACTGGTTCAAGTTACAACGCTTTGAGAAGGCCTTCAATACCACCTCCACCAGAATGGTCACCAAGAAAGGAGTGAACTTTCTGTTGGTCAACAGCGTGGCGTTGCATGGTGACGGTTGTCCTATCTGCCAATCAGTGGAGAAACAGCTTCACACACTGTCCAGGGACCTCAACTGTTCACTACTACAGCATTACCCTCTTTACCGGGTGAGTGATGCGGGCTGTACGGGTCGGGATGCTGCTCCTCCTGAAGAGCGCCACCTGCTGTTCAGAGAGAAGTACGACGTGCTGTCTCAGGAGGCCTCTCACAGGCTGCTGCAGTGGTTTAAGCCCCGCCTGGTTCTCAGTGGCCACACCCACAGTGGTTGTCAGGTTCTCCATGACAACAAGTACCCAGAGATCAGTGTTCCGTCCTTCAACTGGAGGAACCGCAACAACCCCAGTTTCATACTGggTTCGTTCTCCTCCAGTGGTTATGGCCTGTCTAAGTGTTTCCTTCCAGAGGAGAGTACAGTGATAGCCCTCTACTGCTCTACAGGAgccagcctcctcttcctcctccctctggtCCACTGCCTGTGGATGCGAGGCCTTTTCCGGTGCCTCATCCTCTGTCCAATCAGCAAACACAAGTTTCTCTGACGGTCTCAGGTAGAGGTTGTCCCTGACTGCTGAATGATACAGGGTGAGATATGAGCTACATcccatctcaaatggcaccctattccctattaagtgcactacttttaaccaggttAGCCCCATAGGTGCTCTGGTAAGAAGtagtgtactacgtagggaatagggcgcaACTTGGGACGTAGCCACGCTGTCCTCCCCCTAAAGCAGGGGTGGCTGGTGCTCCTGCCCTGGGAGGCTGCCGTGGGTTTGCAGGGTTGTGCTCCACCACAGCACTGACTGACATGTTCATGTGAACACAGGACCAAGTCTTGCTGGTTTGCTGACAGGTTTGTTAGAGTAGGGCtgaaacaaaagcctgcacacccagtagcctTCCAAAAGGAAAATTGGTCATCCTATTGGGAGGTAAAGTAATCTGACTCTAGATCTGTAGTTAAGGACAGCCTCTACCTGGAGAGAACCTGtgtgaccccctccccccccacagAGACTTGGACGTTTTTGAAATTCTGTATTTTTCTTTCTTTAAAGCTGTGAAATTCCACATTCCAAAAAGAACAAAGAACAGAGTTCAGGATAGAGAATAGGGGTCAGGATGGAGAATAGGGGTCAAGATGGAGAATAGGGGTCAGGATGGAGAATAGGGGTCAGGATGGAGAAAAGGGGTCAGGATGGAGAATAGGGGTCAGGATGGAGAATAGGGGTCAAGATGGAGAATAGGGGTCAGGATGGAGAATAGGGGTCAAGATGGAGAACAGGGGTCAGGATGGAGAATAGGGGTCAAGATGGAGAACAGGGGTCAAGATGGAGAACAGGGGTCAGGATGGAGAATAGGGGTCAGGATAGAGAACAGGGGTCAAGATGGAGAATAGGGGTCAGGATGGAAAATAGGGGTCAGGATGGAGAACAGGGGTCAGGATGGAGAACAGGGGTCAGGATGGAGAACAGGGGTCAGGATGGAGAACAGGGGTCAGGATAGAGAACAGGGGTCAGGATGGAGAATAGGGGTCAGGATGGAGAATAGGGGTCaggatagaggtcaggggtcaggatgGAGAATAGGGGTCAGGATAGAGAACAGGGGTCAAGATGGAGAACAGGGGTCAGGATGGAGAACAGGGGTCAGGATGGAGAACAGGGGTCAGGATAGAGAATAGGGGTCAGGATAGAGAACAGGGGTCAGGATGGAGAACAGAGTTCaggatagaggtcaggggtcaggataGAGAACAGGGGTCAGGATAGAGAACAGGGGTCAGGATGGAGAACAGGGGTCAGGATAGAGAACAGGGGTCAGGATAGAGAACAGGGGTCAGGATGGAGAACAGGGGTCAGGATGGAGAACAGAGTTCaggatagaggtcaggggtcaggataGAGAACAGGGGTCAGGATAGAGAACAGGGGCCAGGATAGAGAACAGGGGTCAGGATGGAGAACAGAGTTCAGGATAGAGAACAGGGGTCAGGATAGAGAACAGGGGTCaggatagaggtcaggggtcaggataGAGAACAGGGGTCAGGATAGAGAACAGGGGTCAGGATAGAGAACAGGGGTCAGGATAGAGAACAGGGGTCAGGATGGAGAACAGGGGTCAGGATGGAGAACAGAGTTCAGGATAGAGAACAGGGGTCAGGATAGAGAACAGGGGTCAGGATAGAGAACAGGGGTCAGGATGGAGAACAGGGGTCAGGATGGAGAACAGGGGTCAGGATGGAGAACAGAGTTCAGGATAGAGAACAGGGGTCAGGATAGAGAACAGGGGTCAGGATAGAGAACAGGGGTCAGGATGGAGAACAGGGGTCAGGATGGAGAATAGGGGTCAAGATGGAGAATAGGGGTCAAGATGGAGAACAGGGGTCAAGATGGAGAATAGGGGTCAGGATAGAGAACAGGGGTCAGGATGGAGAACAGAGTTCAGGATAGAGAACAGGGGTCAAGATGGAGAATAGGGGTCAGGATGGAGAATAGGGGTCAGGATAGAGAACAGGGGTCAGGATGGAGAACAGAGTTCAGGATAGAGAACAGGGGTCAAGATGGAGAATAGGGGTCAGGATGGAGAATAGGGGTCAGGATAGAGAACAGGGGTCAGGATGGAGAACAGGGGTCAAGATGGAGAGTAGGGGTCAAGATGGAGAATAGGGGTCAGGATGGAGAATAGGGGTCAGGATGGAGAATAGGGGTCAAGATGGAGAATAGGGGTCAGGATGGAGAATAGGGGTCAAGATGGAGAACAGGTGTCAGGATGGAGAATAGGGGTCAAGATGGAGAATAGGGGTCAGGATGGAGAATAGGGGTCAAGATGGAGAATAGGGGTCAAGATGGAGAACAGGGGTCAAGATGGAGAGTAGGGGTCAAGATGGAGAACAGGGGTCATGGTGGAGAATAGGGGTCAGGATGGAGAACAGGGTCATGGTGGAGAATAGGGGTCAGGATGGAGAACAGAGGTCAGGACAGTGGAtcaggacagagaacagaggtcAGGATGGTGGATCAGGACAGAGAACAGGGGTCAGGATAGAGAACAGAGGTCAGGACAGTGGAtcaggacagagaacagaggtcAGGACAGTGGATCAGGACAGAGAACAGGGGTCAGGATGGAGAGCAGGGGTCAAGATAGAGGTCAGGACAGTGGATCAGGATAGAGAACAGACAACCAACAGACACTATCCTGACCACTGTTCTCTATCCTGATCCACTATCCTGACAACGCCAGAGGCCCGAGCCAGTGTTTTCATACCCTCACCTTGTACAGAGAGTACTGGTCGTTGTCCTTGTTCTGGCGTTCGGAAAGGGACCATTCAACTACAATGAAGGAAaacttcactgtcagtcatctagATGTTCCTCTCTTCGCACCAGGAAGTACAAGGTTCACTGTCTCCCATCTTCCTCTGTGTGGCCCGTAGCAACTCAgaggaggagtgctgatctaggatcaggctgtTCCTGTCCAGGTCATCtttaggggctcccgagtggcgcagcggtctaaggcactgcatctcagtgcttgaggcgtcactacagacaccccggttagattccaggctgtatcacaaccggctgtgatttggAGACCcgtaaggcggcgcacaattggccccagCGTCgtcccgggtttggccggtgtcggccgtcattgtaaataagaatttgttcttaaactgacttgcctagttaaatattattattataaaaaataaaaaaaatcttgtTCAAAGACtaacctgattctagatcagcagtCCTACCCAGAGAGGCTTTGTGGGTAACAGGTCCTGATCTCTATTATATATACTGATACCAGAAGTGCATGTCTTCAAGCAGCATTTAATGTACTAAAGACACACGTCTCTCTGACAACGGTAATGGACTTTTATTATCGTTGTTTTCAttatttaacaaataaaaaaacgttttttctCCTCCTGTATGCAAATGTATGTAAATCTATTTAAATTCCTGATGTAAATACCAATAAAGGAAATTATGTCAACAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863141 lncRNA upstream 10678 88634873 ~ 88635724 (+) False G759533
TU863142 lncRNA upstream 10678 88635369 ~ 88635724 (+) True G759533
TU863120 lncRNA upstream 41781 88603996 ~ 88604621 (+) True G759516
TU863107 lncRNA upstream 48672 88591342 ~ 88597730 (+) True G759509
TU863092 lncRNA upstream 89541 88556144 ~ 88556861 (+) True G759496
TU863169 lncRNA downstream 27158 88694478 ~ 88696111 (+) True G759555
TU863174 lncRNA downstream 32354 88699674 ~ 88700171 (+) True G759556
TU863179 lncRNA downstream 38078 88705398 ~ 88706202 (+) True G759560
TU863085 lncRNA downstream 39014 88706334 ~ 88707776 (+) True G759489
TU863187 lncRNA downstream 134171 88801491 ~ 88802329 (+) True G759567
XM_036986671.1 mRNA upstream 3640 88625441 ~ 88642762 (+) True LOC110510807
XM_036986662.1 mRNA upstream 586699 88017220 ~ 88059703 (+) False acss2l
XR_005052997.1 mRNA downstream 219514 88886834 ~ 88903834 (+) False LOC118965580
XM_021614153.2 mRNA downstream 407304 89074624 ~ 89094403 (+) False slc25a24l
XM_021614152.2 mRNA downstream 407305 89074625 ~ 89094403 (+) False slc25a24l
XM_036986711.1 mRNA downstream 427516 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA downstream 427516 89094836 ~ 89113049 (+) False fubp1
TU862468 other upstream 536102 88109006 ~ 88110300 (+) True G759031
TU862451 other upstream 539455 88082021 ~ 88106947 (+) False G759020
TU862454 other upstream 539455 88082021 ~ 88106947 (+) True G759020
TU862403 other upstream 651257 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 674473 87965692 ~ 87971929 (+) True G758976
TU863171 other downstream 30654 88697974 ~ 88701419 (+) False G759556
TU863172 other downstream 30654 88697974 ~ 88701075 (+) False G759556
TU863230 other downstream 193759 88861079 ~ 88861828 (+) False G759598
TU863232 other downstream 193959 88861279 ~ 88861828 (+) True G759598
TU863313 other downstream 413245 89080565 ~ 89094340 (+) False slc25a24l

Expression Profile