RNA id: TU863899



Basic Information


Item Value
RNA id TU863899
length 634
RNA type TUCP
GC content 0.44
exon number 4
gene id LOC110530888
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88827984 ~ 88833229 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACTGGAACAGCGAAATTCGACTTGTGGCACTGAAATGCTATATTGTAGTCGAATTGTCTCCGATTAAGATTTACCGTGAGTTTTGACAATACTTTTCCTTATTAGTTTTAGACAAGACGTGACAATGTCTCAAGATTGGATCGGTTATAGCTATGCTGCATTGGTCTCGGCAGGAGGAATCGTGGGTTATGTAAAAGCAGGAAGTGTAACTTCATTGGTTGCGGGACTTTTCTTTGGGTTCCTAGCTGGACTTGGTGCCTACCTGATGTCTCAGAATCCTAAAGATGTCAGGCTTTCTCTCGGTACCTCAGGAACACTGGCCATTGTCATGGGAATGAGGTTTCTAAATTCCTGGAAGTTCATGCCAGCTGGTCTGATGACAATAGCAAGttTCCTGATGCTGGGGAAGACTGCAGTGGGGATGTTCAAGAGACCACATGATTCTTAAATGTGAAGAATATAGGAATGTCACTGTTTTTCTATCTGatgacatctagtggccctttcTGGGTACTTTAGATGATCACAGGTGTCTGCCATTACCCCAGATTCACTGTGTGGCTTTTTACCGGTAGGCTCTGATGAAGGTCGAGTGACCGAAAGCTGAACCACAATTAAAGAAATGTGCATCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU863896 lncRNA downstream 279 88827592 ~ 88827792 (-) True G760080
TU863892 lncRNA downstream 4374 88823486 ~ 88823697 (-) True G760076
TU863891 lncRNA downstream 4694 88823119 ~ 88823377 (-) True G760075
TU863890 lncRNA downstream 6903 88820940 ~ 88821168 (-) True G760074
TU863885 lncRNA downstream 18639 88808981 ~ 88809432 (-) True G760070
TU863918 lncRNA upstream 18109 88848920 ~ 88849139 (-) True G760088
TU863919 lncRNA upstream 18584 88849395 ~ 88849626 (-) True G760089
TU863920 lncRNA upstream 18886 88849697 ~ 88849919 (-) True G760090
TU863922 lncRNA upstream 24498 88855309 ~ 88856155 (-) True G760092
TU863924 lncRNA upstream 26769 88857580 ~ 88857814 (-) True G760094
XM_036986678.1 mRNA downstream 8944 88671465 ~ 88819127 (-) False LOC110530889
XM_036986677.1 mRNA downstream 8949 88671465 ~ 88819122 (-) False LOC110530889
XR_005052995.1 mRNA downstream 8949 88671465 ~ 88819122 (-) False LOC110530889
XR_005052996.1 mRNA downstream 8949 88671465 ~ 88819122 (-) False LOC110530889
XM_036986683.1 mRNA downstream 112500 88671465 ~ 88715571 (-) False LOC110530889
XM_036986693.1 mRNA upstream 3746 88834557 ~ 88846601 (-) True pak1ip1
XM_036986694.1 mRNA upstream 33750 88864561 ~ 88883016 (-) True LOC110530885
XM_036986697.1 mRNA upstream 74501 88905312 ~ 88917235 (-) False LOC110530884
XM_021614171.2 mRNA upstream 74501 88905312 ~ 88919238 (-) False LOC110530884
XM_021614174.2 mRNA upstream 74501 88905312 ~ 88919238 (-) False LOC110530884
TU863860 other downstream 124017 88702991 ~ 88704054 (-) True G760051
TU863763 other downstream 162931 88663604 ~ 88665140 (-) False G759998
TU863742 other downstream 292024 88535640 ~ 88536047 (-) True G759982
TU863003 other downstream 384603 88431204 ~ 88443468 (-) False G759421
TU862683 other downstream 885249 87940904 ~ 87942822 (-) True LOC110530858
TU864029 other upstream 186238 89017049 ~ 89017979 (-) True G760165
TU864056 other upstream 248487 89079298 ~ 89081345 (-) True G760182
TU864071 other upstream 269033 89099844 ~ 89102382 (-) True G760192
TU864226 other upstream 500470 89331281 ~ 89332776 (-) True G760306
TU864256 other upstream 543074 89373885 ~ 89407502 (-) True LOC118965582

Expression Profile