RNA id: TCONS_00036802


Basic Information

Item Value
RNA id TCONS_00036802
length 420
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id XLOC_017936
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 11011197 ~ 11016927 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAAGTGAACAGGTAGACATGTGAACCAGGATTGTTTGGGTTTTTCAAAGCCTTGTCGAGGAACATGTGCGTTCTACATTTCATTGTAAACAAAGTGAAAGTGGGAGTGATTGCGTGATGAAGAACACTGACACTAACTGACAGTAGGGATGAAACAGTTCAATCTACTCGTCTTTTTCAGGACCAGTCCTACAGAGTCTGTTAACAGAGTGAAAAGCGGGAGTGATCGGGGTACGGAAGAATGCCCAGAAAGAACGGCACTAAAGTAACAGACCTGTTAAATATCCGTGTCTGCATGGGACGCTTTTGGGTCTGGACAGGGTGATCTAGGTTATCTTTGCAACAACAATGAAAAGGGGCATGCATTGTTTTTGTGTCTGTCTGAATTTATAATAAATGTCTGCTGAAACACTGGCAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036799 lncRNA downstream 18908 10979458 ~ 10992289 (-) True XLOC_017935
TCONS_00035380 lncRNA downstream 588384 10347783 ~ 10422813 (-) True XLOC_017933
TCONS_00035381 lncRNA downstream 612021 10347783 ~ 10399176 (-) False XLOC_017933
TCONS_00035378 lncRNA downstream 893200 10114028 ~ 10117997 (-) True XLOC_017931
TCONS_00036798 lncRNA downstream 932982 10077157 ~ 10078215 (-) True XLOC_017930
TCONS_00036806 lncRNA upstream 83803 11097393 ~ 11099994 (-) False XLOC_017937
TCONS_00036807 lncRNA upstream 611314 11624904 ~ 11629535 (-) True XLOC_017938
TCONS_00035384 lncRNA upstream 616291 11629881 ~ 11634468 (-) True XLOC_017939
TCONS_00036449 lncRNA upstream 967188 11980778 ~ 11985215 (-) True XLOC_017940
TCONS_00035385 lncRNA upstream 1226340 12239930 ~ 12243746 (-) True XLOC_017941
TCONS_00035382 mRNA downstream 523246 10484015 ~ 10487951 (-) True XLOC_017934
TCONS_00035379 mRNA downstream 723041 10287061 ~ 10288156 (-) True XLOC_017932
TCONS_00035377 mRNA downstream 890755 10099109 ~ 10120442 (-) False XLOC_017931
TCONS_00035376 mRNA downstream 892379 10098590 ~ 10118818 (-) False XLOC_017931
TCONS_00035375 mRNA downstream 946067 10057750 ~ 10065130 (-) True XLOC_017929
TCONS_00035383 mRNA upstream 84649 11098239 ~ 11178022 (-) True XLOC_017937
TCONS_00035386 mRNA upstream 1552511 12566101 ~ 12642685 (-) True XLOC_017942
TCONS_00035388 mRNA upstream 1922506 12936096 ~ 12936861 (-) True XLOC_017950
TCONS_00035390 mRNA upstream 2006899 13020489 ~ 13140309 (-) False XLOC_017951
TCONS_00035391 mRNA upstream 2007083 13020673 ~ 13140346 (-) False XLOC_017951
TCONS_00035374 other downstream 957496 10053405 ~ 10053701 (-) True XLOC_017928
TCONS_00035371 other downstream 1104813 9906268 ~ 9906384 (-) True XLOC_017925
TCONS_00035370 other downstream 1230330 9777179 ~ 9780867 (-) True XLOC_017924
TCONS_00035367 other downstream 1250773 9752531 ~ 9760424 (-) False XLOC_017923
TCONS_00035364 other downstream 1360135 9644065 ~ 9651062 (-) True XLOC_017922
TCONS_00035387 other upstream 1592128 12605718 ~ 12607421 (-) True XLOC_017943
TCONS_00035389 other upstream 2006899 13020489 ~ 13140227 (-) False XLOC_017951
TCONS_00035393 other upstream 2190476 13204066 ~ 13208752 (-) True XLOC_017952
TCONS_00035395 other upstream 2355637 13369227 ~ 13369343 (-) True XLOC_017955
TCONS_00035409 other upstream 2804805 13818395 ~ 13818510 (-) True XLOC_017960