RNA id: TU863207


Basic Information

Item Value
RNA id TU863207
length 879
lncRNA type sense_over
GC content 0.44
exon number 1
gene id LOC118965580
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88886834 ~ 88903834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTCTGAATCAGCACAGTTCTGGAAAAGGGTTGTGAATTTGGATGCAGCCCAACGTTGGTGTTGATGAGGAGAACCCTAGCCAGTATATAAATGGGTGGATGTATTGGCTAACGTTAGCCTTGTGGTTTATGTACAGGTGACCACGGCCGTGGTGAAGGTGGACGAGTACctgctagagatggtggtgtatcGTCAGGGGCGATCCATCGGAACCTCCTACCCCAAACtactcagcaacaacaacaggGACCTGTAGTGGGGAGATCTACGCACCCTGATTCTGAAATcaggcccaaatggaaccctattccctatgtagtgcactgctttcaaccagggcccatagggctaggagtgcactatatagggaatagggttccataggactctggtctaaagtagttcactatatagggaatagggttccatatggctctggtctaaagtagtgcactatgtagggaatatcgTGCCATTTGGGGCCTAGTCAGAATCATCTGTCATGTTAAAGATTGATCATTGTCGTGTACTGTGTGTTTGACACCATATTGTTATTAGGTTGTGTCCTCCTCCATCAAATCCTTAACCTCGTTGCCAGGTTCAATGACTAATTACAGATCCTGGATCATTCATCATTTGCTCTGAACTATTATATTAGAGGTTACAGTTGATCCAGGACCAggattgtgtctctctctgctaccagctctcctctctgtcctgaatATTCTGTTCTGGTCCTTGGTCTTTCACAAAGCAGAGGGCTGTTTTTATTTCCTGTTAAGAAAACTACTAAAGCATTTTGACAATCCATTAAAACCTAGATTTACTATGATAGGAACCTGATTGTCTAACATTATATTAACAgtgttgtact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863242 lncRNA upstream 6691 88895949 ~ 88896189 (+) True G759608
TU863206 lncRNA upstream 39818 88862022 ~ 88863062 (+) True G759577
TU863229 lncRNA upstream 41315 88861079 ~ 88861565 (+) False G759598
TU863231 lncRNA upstream 41315 88861279 ~ 88861565 (+) False G759598
TU863228 lncRNA upstream 42189 88860332 ~ 88860691 (+) True G759597
TU863254 lncRNA downstream 24318 88928076 ~ 88929046 (+) True G759618
TU863266 lncRNA downstream 36349 88940107 ~ 88944442 (+) True G759630
TU863272 lncRNA downstream 51699 88955457 ~ 88955763 (+) True G759636
TU863286 lncRNA downstream 71860 88975618 ~ 88976978 (+) True G759642
TU863332 lncRNA downstream 104255 89008013 ~ 89008991 (+) False G759668
XM_036986673.1 mRNA upstream 235560 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA upstream 235560 88646403 ~ 88667320 (+) True LOC110510805
XM_036986675.1 mRNA upstream 239499 88646402 ~ 88663381 (+) False LOC110510805
XM_036986676.1 mRNA upstream 239922 88646400 ~ 88662958 (+) False LOC110510805
XM_036986671.1 mRNA upstream 260118 88625441 ~ 88642762 (+) True LOC110510807
XM_021614153.2 mRNA downstream 170866 89074624 ~ 89094403 (+) False slc25a24l
XM_021614152.2 mRNA downstream 170867 89074625 ~ 89094403 (+) False slc25a24l
XM_036986711.1 mRNA downstream 191078 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA downstream 191078 89094836 ~ 89113049 (+) False fubp1
XM_036986713.1 mRNA downstream 191078 89094836 ~ 89113049 (+) False fubp1
TU863230 other upstream 41052 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 41052 88861279 ~ 88861828 (+) True G759598
TU863171 other upstream 201461 88697974 ~ 88701419 (+) False G759556
TU863172 other upstream 201805 88697974 ~ 88701075 (+) False G759556
TU862468 other upstream 792580 88109006 ~ 88110300 (+) True G759031
TU863313 other downstream 176807 89080565 ~ 89094340 (+) False slc25a24l
TU863314 other downstream 176807 89080565 ~ 89094394 (+) True slc25a24l
TU863518 other downstream 664245 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 792662 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 1256512 90160270 ~ 90208959 (+) False G760623

Expression Profile