RNA id: XM_036986698.1


Basic Information

Item Value
RNA id XM_036986698.1
length 2893
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110530884
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88905312 ~ 88919239 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGATACTTCCTCTATGGCGAGACTATTTAAACCACTGCCCGCGAAAAAATACACGAAGGATCGTCTTTCTGACGCCTTCTGAGAGGGTCTGCTGGTTTCATTTAATGTTATTCTGCCCAGGTCATCAACACAGCGTTTGATACTAGTTTATTCTGCTCACAGTTCGCGGGGACTGTCCTGTCGTTTTGGAAGAACTATCCGCGTCTATCAGGTGGCTGATATCCTGTTTTCTTCTCACGGTGACTGACAACTTCATGGACATTTAGATTTTGGTATCCTAAAACATATGATACGATTTTGAATCAGgtttcctcattaccatacGGAAGTGGCATCTTTGATTGTGCTGCTGGCAGAATTGAACTGTGCTGTTGCCTGAACATAAAACCATGGGAGATCTAGGGCAGAAACAACAGAAACTGGACCCATTTTTGAAGAAGATTACTAGTCCAAGTAACACTTCAAACAACCAACAACAAACTCCTGACCAATCTCCAGGAGCTGATGccaagGGTAAATCCTTCTGCAACCAGCCAGGAACATCTCGCCAATCTCAGGATCCTCATTTCAAGAAAGAAGCACATGATGAAAGCCATTCCTTCCGATACCGCTTCAAATTCAAACAATACAGTGTTACATGCCATACTCATGGAACGGTCCTGGGTGCACTGCGAACAAGTGAGATGTTCGAGAATacgacaaagaaaaaacaggggATGGAAATTGTCATccaaagagagaaagagccacGGGCAGCTGTCAGTACACATTTCCCCTGCCATTTAATTGATAACAATGAGCTACTGACAGTCAGCTTCATCAGGGTTCTAAATGGTAGTTCTTCAGATACCCGGGGCCTTTACAAACAGAGTAACCCACCAAAAATACGACCTGACAAGTTGATGACTTTCTGTGTTGAAACTGAGGGTGGAAAAGGTATTAAAACGAAAGTAATGAAAAACCCAGCGCTAAGGAAGAATGTAAAGTATGTTTGTGTGTACGCATACAAAGGGGAAAAGGTGAAGCAAGCCTTGAGGAGAGATGGGCGATTTGATAAAACCGTCTTTAAAACACGCTGTGTTCTTTCTGAGCCAGAGACCGGTGTCGACACAGAGATGTCCCAGCTTGTTGATGGTCTTGATGGGAAAAGTCGTAAAGGTGAAATGTTGATTGTGAAGGTTAAACGTATCGGTCGTGTATCTCAGCCACAGCCAGATAGTCTTGAGGATTGGGACAACACACCAACTGAAGAGCTGTCCGTCCCCTCTGGTGTAACATCGGAAGcagctctctctcctcagagTCCTACCACAACAGACACAGTTAAAACACAGTTGCAGTCAAAAGAGGCAGGAAAAGATGGTAGTTCTCTGGTAGTGAAGCAAAAGATTCCAAACTCTAAAGAGATCCTAAGCATCCTGCGTTCCCAATATGCAGGTTTGGTAGATcacttgaaagagagagagaatttgaaaAAGCCTTCAGATGTGCAACAATTCTTGAGAGTAgagtttggaaagaaaacacagaGCTTCCAAGAGGTGAAGAAAGTGAAGAGACTAATAGAGCTGAGTGCTTCTGTTTGTCAGGTGAGAATTGAAGGGAATGCAAAAGGAACTGGCTTCCTTCTGTTTGAAAAGTTCATCCTTACAAACGCCCATGTTGTCCATCAAATCTATGAGCCGATAACTAACAAGCTGCAACAATCGGTAACAGTCACGTTTGACTTTGAAGACCTGGATGAGAGAACGCAGCAGATACCAGTGCAAAGTGAGGTTGTAGCCTATGGAAAAGTTGATTCTGGGAATCTTGACTTTGCTTTGCTGGAGCTTAGCTCAGATCCTGACATCACTTTGCCTTCAAGCTTGCTTGACATCTTCAGCTTTCCGTCTCTAGAGGGTGGAATCTGCATCGTCGGCCACCCCGAGGGCGGGGTGAAAAAGACAGACCCCTGCTTTATCATTCAATATGGAGATCGTAAACAAGCTGTAGAAAAACATGTAACAGAAAATGAGGAATTCTTATATGTTATAAACAACAGATATTTTGAGGAGAAATGGGACATCGACACACGTCTACCGAGGGACACAGAAAAGATTACCTATGACACCTGTTTCTTCCACGGTGCCTCTGGCTCTCCAGTCTTCAATGAGTACTGCCAGCTGATCGCTATGCATACAGCAGGCTACTCCTACCAGGGTAAAAGAGGGAAAACCCAGAGTGTCATAGAGTATGCCATTCCCCTGTCAGGCATACTTGAGGAGATCATCATTCAAGCGGTGCGTAGGAAAAGAGTTGATGTGCTACAGGAATTCCTGAGCCAGAGGAGTATGAAATTAGACGTAGTGATGGAAAGAGTCGAGGCACAGTCTGATAATGCCAGCCTGGTCAAGGCATTTCAGGAGAAGCTGCCGTTTAACAGTAACTCTTCGGCTACAGATCAGAGAACCTTCCACCAGTTCCTCTTTGATAAAGCCACAGGGGTCGAAGCCACAGGGGTCGAAGCCACAGGGGTCGACGCCACAGGGGTCGAAGCCACAGGGGTCGAAGCCACAGGGGTCGAAGCCACAGGGGTCGAAGCCACAGGGGTCGAAGCCACAGGGGTCGAAGCCATGGAGGTGGATGatgaccagtggtggaaaaagtgccCAGTTGTCTTGACTTGAGTAAAGATACCTTTTAATAGAAAGTGACTCCAGTGAAAGTGGGAGTCGCCCAGTAAAATACTTCTTAAGTAAAAGTCCAAAAGTATTTAGTTTAAAATAgccttaaatatcaaaagtaaataatttcaaattccttacggttaagcaaagcagacggcaccattttcttgttttgaaaatgtatggatcgccaggggcacactcagacaACATTAAAACACTAaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863941 lncRNA downstream 1558 88903428 ~ 88903754 (-) True G760103
TU863962 lncRNA downstream 2523 88901782 ~ 88902789 (-) True G760124
TU863959 lncRNA downstream 8569 88896537 ~ 88896743 (-) True G760121
TU863953 lncRNA downstream 20951 88884115 ~ 88884361 (-) True G760115
TU863927 lncRNA downstream 43769 88861111 ~ 88861543 (-) True G760097
TU863981 lncRNA upstream 35436 88954674 ~ 88955021 (-) True G760141
TU863950 lncRNA upstream 36212 88955450 ~ 88971355 (-) True LOC110530883
TU863988 lncRNA upstream 55849 88975087 ~ 88977036 (-) True G760147
TU864003 lncRNA upstream 88010 89007248 ~ 89007899 (-) True G760157
TU864008 lncRNA upstream 88778 89008016 ~ 89009423 (-) False G760158
XM_036986694.1 mRNA downstream 22296 88864561 ~ 88883016 (-) True LOC110530885
XM_036986693.1 mRNA downstream 58711 88834557 ~ 88846601 (-) True pak1ip1
XM_036986689.1 mRNA downstream 72083 88828071 ~ 88833229 (-) False LOC110530888
XM_036986692.1 mRNA downstream 72159 88828071 ~ 88833153 (-) False LOC110530888
XM_036986686.1 mRNA downstream 73577 88828071 ~ 88831735 (-) False LOC110530888
XM_036986703.1 mRNA upstream 4485 88923723 ~ 88971684 (-) False LOC110530883
XM_036986704.1 mRNA upstream 4485 88923723 ~ 88971684 (-) False LOC110530883
XM_036986705.1 mRNA upstream 4485 88923723 ~ 88971684 (-) False LOC110530883
XM_036986706.1 mRNA upstream 4485 88923723 ~ 88971684 (-) False LOC110530883
XM_036986707.1 mRNA upstream 4485 88923723 ~ 88971684 (-) False LOC110530883
TU863903 other downstream 73584 88828133 ~ 88831728 (-) False LOC110530888
TU863905 other downstream 73584 88828133 ~ 88831728 (-) False LOC110530888
TU863908 other downstream 74224 88828133 ~ 88831088 (-) False LOC110530888
TU863898 other downstream 74365 88828133 ~ 88830947 (-) False LOC110530888
TU864029 other upstream 97811 89017049 ~ 89017979 (-) True G760165
TU864056 other upstream 160060 89079298 ~ 89081345 (-) True G760182
TU864071 other upstream 180606 89099844 ~ 89102382 (-) True G760192
TU864226 other upstream 412043 89331281 ~ 89332776 (-) True G760306
TU864256 other upstream 454647 89373885 ~ 89407502 (-) True LOC118965582

Expression Profile