RNA id: XM_021614152.2


Basic Information

Item Value
RNA id XM_021614152.2
length 1822
RNA type mRNA
GC content 0.47
exon number 10
gene id slc25a24l
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89074624 ~ 89139486 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCATCATGTCTATCGCAGTAGAGGAGCATCTACCGCATTGAAGACATGTTCAGTCGGGCTGCCGGTGCTTTATGACTCAGCGTTCATATGGAGAAAAAAAGAAGATGAAGCACATTGCCTTTGCACCTTAATAGCCTGTAGTTGTAGTATTTGTAGAATTGGTGCTTATTTATATTCCATTTCAAATTttgtaattaaaaaaatatatatattattgaagAATCATGGATCAGTTTCGTGGTTTGTTTGTGAAACTAGACAAGAATAACGACGGGTCTATATCAGTGGAAGAACTTCATAATGAGATGAAAAAAACGGGCATTATGGCTGCAGATCAGAAGGCTCAGACTGTCGTTAATAACTATGACCGAAACAAGGATGGACGTTTAGATTATGACGAATTTCTAAGCTATATGAGTGACAGAGAGAAGAAATGGAGAATTCACTTCATGGCCCTTGACAAGAATAAATGCGGGGTCATTGGCCAGGAGGAAATCATAGATCTGTTCAAGGAGTTAGGAGTGAACATATCAAAGCCGAATGCAAAAAGAATTATACAAATGATGGATGAGGACAGTTCTATGACCGTGGACTGGGGAGAGTTCCTGCAGCATGTCATCCTCAACCCCGCAGAGAACCTGGGAGAACTGGTCACTTCATGGAAACACACTCTGGTGTTTGATGTGGGTGAGAGCCGGACCATGCCCCTGGAGCTGCCCCCGGACCTGTCAGCAGGCTCAGGGGAATGGAGGAGTTTTGTCCTGGCTGCAGGGCTGGCCGACGCCGTGTCCAGAACCCTGACTGCTCCTATCGACCGCCTCAAGACACAACTACAGgTGTATGGATCCAAGGCGTCCTCCCAGGGATTCAGAGAGCTAAAGGCGGGGGGTGTGAGGTCTATGTGGCAGGGAAACGCTGTGAACGTGCTGAAGGGAACCCCCCAGTCAACTCTGCAGTGCCTCATCTACGCTCAGatgAAGGTGTACACCCAGCGCTGGCAGCAGGAGAGTCTGTCAGTACAGCAGAGGTTTgggctgggctgtgtgtctggggCGGTGGCTCATGCTGTCTTCTATCCTCTAGAGGTGCTAAAGGTGAGACTGAACCTATGGGCAGGTACCTACAGCGGGGTGGTGCAGTGTGCCCGCTCCATCTACAGGAATGAGTCTGCTGCATCCTTCTACAGGGGCTTCAGACCCAGTATCCTCTGTATGATTCCCTACGCTGGGGTGGAGTGTGCCGTTCACCAGtCCATTGTGACCTGGGCTAAGACCCAACAGGACTACAGCAGTGACTCCCAGCTCTTCTTTTTCAGTTTTGTGGCCTTCTCTGCTGGACAGATAAGCAGCTATCCTCTAGCTGTGATCAGGACCCAGCAGCAAGCTCAGGCTTTCAGTTCAACTTCACCCACAACTTTTCTTCAGGGATTCACAGGCATCTATGAGAGACATGGAATACGAGGATACTACAATGGGATGGGGGCCAGTTTCGTCCGGGCGATTCCATGCGCTCTGTTAAACTACACCTTGATGAAGAAACTAGACACAATGCTTTCCTGATTTCAGAGTCATGGTTAATTATAATTTGTTGTAGGTTTTTGTGAATGATTTTATGTAATACTCTGTACAAAACAACAACCTTCAAACTTGATGCCATTGTCAATAAACTGTCCCAAAATACTTCAAATTGCAATGAACTACCAAATAGAACTACCAAATATACAACCAAAGGACTGTTGTTGGAGGGCTGATTGGGGCCCAATCTCCAGCCTGACCAATCCTTTGTTAACCCCTATTGTCATTAAATCAGTGTGAAGTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863352 lncRNA upstream 25848 89048213 ~ 89048777 (+) True G759682
TU863345 lncRNA upstream 55859 89018171 ~ 89018766 (+) True G759678
TU863333 lncRNA upstream 65634 89008013 ~ 89008991 (+) False G759668
TU863348 lncRNA downstream 43194 89137597 ~ 89137931 (+) True G759680
TU863388 lncRNA downstream 60613 89155016 ~ 89155613 (+) True G759716
TU863395 lncRNA downstream 86272 89180675 ~ 89181326 (+) True G759723
TU863309 lncRNA downstream 126597 89221000 ~ 89223706 (+) True usp33
TU863421 lncRNA downstream 146056 89240459 ~ 89241436 (+) True G759741
XR_005052997.1 mRNA upstream 170791 88886834 ~ 88903834 (+) False LOC118965580
XM_036986673.1 mRNA upstream 407305 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA upstream 407305 88646403 ~ 88667320 (+) True LOC110510805
XM_036986675.1 mRNA upstream 411244 88646402 ~ 88663381 (+) False LOC110510805
XM_036986676.1 mRNA upstream 411667 88646400 ~ 88662958 (+) False LOC110510805
XM_036986711.1 mRNA downstream 433 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA downstream 433 89094836 ~ 89113049 (+) False fubp1
XM_036986713.1 mRNA downstream 433 89094836 ~ 89113049 (+) False fubp1
XM_036986714.1 mRNA downstream 433 89094836 ~ 89113049 (+) True fubp1
XM_036986719.1 mRNA downstream 54587 89148990 ~ 89223706 (+) False usp33
TU863230 other upstream 212797 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 212797 88861279 ~ 88861828 (+) True G759598
TU863171 other upstream 373206 88697974 ~ 88701419 (+) False G759556
TU863172 other upstream 373550 88697974 ~ 88701075 (+) False G759556
TU862468 other upstream 964325 88109006 ~ 88110300 (+) True G759031
TU863518 other downstream 473600 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 602017 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 1065867 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 1066911 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 1279684 90374087 ~ 90389077 (+) False G760718

Expression Profile