RNA id: XM_036986714.1


Basic Information

Item Value
RNA id XM_036986714.1
length 2401
RNA type mRNA
GC content 0.56
exon number 17
gene id fubp1
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89094836 ~ 89113049 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGACTATTTTTTCAACGAGAACGGCCATCTTCTCTCTCCGGGCTTGAGAAGACAAGTGTTACAACAGATATGGCTGACTACTCGAACGTGGCTCCGCCGTCGGGAAATGGCGCCGGAATGAACGACGCTTTTAAAGACGCACTTCAGCGAGCTAGACAGATCGCCGCTAAGATTGGTGGTGACGGCGTTCCCGCAGCGCCCTCGGGTAATGAGTTTGGCTACGGAGGCCAGAAGCGACCCCTAGAAGACGCCGACCAACCAGAGACCAAGAAGGTGGCACCGAATGACCCGTTCTCAGCAGCGATGGGAAtgggaggaatgggaggtggtggacCACGGTCGTCATCAGAGGAGTTCAAGGTTCCTGACGGGATGGTTGGATTCATtattggaagaggaggagaacagaTATCCCGCATGCAGCAAGAGTCGGGATGCAAAATCCAGATCGCCCCCGACAGTGGAGGAATGCCTGATAGGTCAGTCACACTGACAGGATCTCCAGACTCAATACAAGCTGCCAAGAGGCTGCTGACGGAGATCGTTGATAAGGGTCGTCCTACTCCAGCCTTCCACCACAACGACGCCGGTGGCCCCGGTATGTCTGTCCAGGAGATGCTGGTCCCTGCCTCCAAGGCTGGCCTGGTCATCGGGAAGGGAGGAGAGACCATCAAACAGCTGCAGGAGAGGGCCGGGGTCAAGATGGTGATGATCCAGGAAGGGCCTCAGAACACAGGAGCGGACAAACCTCTACGCATCTCTGGGGAACCTTTTAAAGTCCAGCAAGCCAAAGACATGGTGATGGAGCTGATCAGAGAGCAGGGCTtcagggagcagagaggagagtacGGCTCCAGGATGGGTGGCGgcggaggaggtgagggcctggATGTTCCTGTCCCCAGGTTTGCGGTAGGAATCGTGATCGGGAGAAACGGCGAGATGATCAAGAAGATCCAGAGCGACACAGGAGTCAGGATCCAGTTCAAACCAGaTGACGGCAGTACCCCGGAGAGGATAGCCCAGATCGTGGGTCCTCCTGAACAGTCCCAGCATGCAGCAGAGATAATCTCTGACCTTCTGAGGAGTGTCCAGCAGGGGGGGCCGGGCGGTCCTAACGGAGGGGGCAGGGGCAGAGGCAGGGGGGGTAACGGGGGTGGTAACTGGAACATGGGTCCTCCAGGAGGACTGCAGGAGTTCACCTTCACCGTCCCGACCATGAAGACTGGACTCATCATCGGCAAAGGAGGAGAGACCATCAAGGGCATCAGTCAGCAGTCTGGGGCGCGTATTGAGCTCCAGAGAAATCCTCCCCCCAACTCCGACCCCAACATTAAGATGTTCACCGTCCGAGGATCTCATCAACAGATAGACTACGCACGGCAGCTGGTCGAGGAGAAGATCGGGggtCCAGTCAGTCCAATGGGTGGTCCCCAAGGTCCACCAGGCCCCCACGGAGGTCCGTCTCCCCACGGCCCCCCCGGTCCTCCTGGGCACCCTGCTCAGATGGGCCCCTACAACCCCGGCCCCTACAACCAGGGACCGCCAGGACCACATGGTCCTCCGGCTCCCTACCAGCCTCAGGGTTGGGGCAACGGCTTCCCTCACTGGCAGCAAGGACAGCCTGATCCTGGTAAAGCTGCAGCTGATGCCAACGCAGCGGCCTGGGCAGCGTATTACTCCCAGTACCAGCAGCAACCCCAGGCCCCCATGACGCCCACCGGCGGAGCCCCTGGCACCACACAGGCCAACGGGCAAGGGCAGCAAAGTCAGCAACCACAGGACTACACCAAGGCCTGGGAGGAGTACTATAAGAAACAAGgtcAAGCGGCCCCTCAGGCGGGAGCAGCACCAGGTGGTCAGCCAGCCGGTCAGCCAGCCGGTCAGCCGGACTACAGTGCTGCCTGGGCAGAATACTACCGTCAGCAGGCTGCTTACTACGGACAGGGCAGCCCACAGGCCATGGGGGCACAGCCACAAGCACCTCAGGGCCAGTAATGTGAAGTGGACATAAAGTAAATGCGACATTGTGGAAAAACAAAAAAACCCTTTTGTTAAATGTGTTGGATGGTGCAGATGCCTTGAAGATCTTAATTTCCCCCCTTTGGTTGGTTTGTTTTCAAGTGTTTCACAATAATGTGATGGCAGCAGTCTACCCGGGAGACACAAACACTTCATCTTTTTGGTTTTTCtacttatttttttttcttctcctccttGTAAATGAACGGTTTTTGGGTTTTTAGTGAGGTAATTTATATGTTCATTCCAGCCCCCATGTATCTTCATGCTATGTGGTTCAAGAGCTCCTGTTATTTAGCTAGTTTACCATGGAAAATCATCTCCGTTTTTAAATCATATGCCTGTTGTGTTTTGCAATAAAACTAAGTGAAACCTCCT

Function

GO: NA

KEGG:

id description
K13210 FUBP; far upstream element-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863352 lncRNA upstream 46059 89048213 ~ 89048777 (+) True G759682
TU863345 lncRNA upstream 76070 89018171 ~ 89018766 (+) True G759678
TU863333 lncRNA upstream 85845 89008013 ~ 89008991 (+) False G759668
TU863348 lncRNA downstream 24548 89137597 ~ 89137931 (+) True G759680
TU863388 lncRNA downstream 41967 89155016 ~ 89155613 (+) True G759716
TU863395 lncRNA downstream 67626 89180675 ~ 89181326 (+) True G759723
TU863309 lncRNA downstream 107951 89221000 ~ 89223706 (+) True usp33
TU863421 lncRNA downstream 127410 89240459 ~ 89241436 (+) True G759741
XM_021614153.2 mRNA upstream 433 89074624 ~ 89094403 (+) False slc25a24l
XM_021614152.2 mRNA upstream 433 89074625 ~ 89094403 (+) False slc25a24l
XR_005052997.1 mRNA upstream 191002 88886834 ~ 88903834 (+) False LOC118965580
XM_036986673.1 mRNA upstream 427516 88646402 ~ 88667320 (+) False LOC110510805
XM_036986719.1 mRNA downstream 35941 89148990 ~ 89223706 (+) False usp33
XM_036986718.1 mRNA downstream 35970 89149019 ~ 89223706 (+) False usp33
XM_036986717.1 mRNA downstream 37864 89150913 ~ 89223706 (+) False usp33
XM_036986720.1 mRNA downstream 112040 89225089 ~ 89291341 (+) False LOC110530860
XM_036986721.1 mRNA downstream 113078 89226127 ~ 89291341 (+) True LOC110530860
TU863314 other upstream 442 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 496 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 233008 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 233008 88861279 ~ 88861828 (+) True G759598
TU863172 other upstream 393761 88697974 ~ 88701075 (+) False G759556
TU863518 other downstream 454954 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 583371 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 1047221 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 1048265 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 1261038 90374087 ~ 90389077 (+) False G760718

Expression Profile