RNA id: XM_036986718.1


Basic Information

Item Value
RNA id XM_036986718.1
length 6023
RNA type mRNA
GC content 0.52
exon number 23
gene id usp33
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89148990 ~ 89223706 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGGTTTCACGGCGTGTGGGAAAGGAGTTAGGTGCGGTTGaatcagtgaaggtaacctgtagtggacttctgatatttgtttgtgtttcttctaACCAGGGCGAGGGGGAGCTCCGTGTCACGCAACTTGGGTAAGGTTCAGATTCAGGTGAGTGATGCCTGTAGAGTCCAGCAGTGACTGTCCCCATCTGGAGTGTGTTGGAGAAATCACCAAGGATGAACTGATCCACAAGTCACATGGCCAGTGTCAAGACTGCAAGGTTGGAGGACCAAATCTGTGGGCGTGTCTGGAGaacaCCTGTGCCTATGTGGGCTGTGGAGAATCTCATGCTGACCATAGCACTGTCCACTCACAGGAGACTGGGCACAACCTGACAGTGAACCTGACCACTCTGAGGGTGTGGTGTTATGCCTGTGGGAAAGAGGTGTTTGTGGAGCGTAAACTGGGCCCTCACTGCCCTGTCCCCAGCACCAAGACCCTCGCTTCACCTCAGACCAACAACACACAGTTCCAGGAGTGTAGCAGGTCGCAGGGCAGTCCCACTTCTCTGAGACTGCCCCCTACTAATGGCTGTGAAGACCTGGGCAtggaaacggaggaggaggacgagCTACGCGCCAGAGGTCTGACGGGTCTGAAGAACATCGGGAACACCTGCTATATGAATGCAGCCCTGCAGGCCCTCTCCAACTGtcctcctctTACCCAGTTCTTTGTGGAGTGTGGAGGTCTGGTGAGGACAGACAAGAAGCCTGCTCTGAGTAAGAGCTACCAGAAACTGGTGTCAGACCTCTGGCACAAGAACAGGCCATCCTATGTGATCCCTACCAATCTGTTCCAGGGGATCAAGGCTGTTAACCCCATGTTCAGAGGATACTCCCAACAGGACTCTCAGGAGTTCCTGCGCTGTCTGATGGACCAGCTCCACGAGGAGCTGAAGGAGCCACTAGCCGAGCCCCCCGACAACGACCAACACTCGCACGCCATCGCCATGGACGACTGCCCTGAGGACGACAGCCGCAGCCAATCGGACGGAGACTTCCAGTCGTGCGAGTCTTGCGGCAGCAGCGAGCGGGCGGACAACAAAGGCGGGAGCGGGGATGGTCGGGCGGCGGCGCCGCCGTCGGGGGAGGAGTCTAACGAGGCAGAGATGCTGATCCCTGATGTACCTGACTCCTCCCACTCCTCGCGTCAGACCAATAGGGAGTGGCAGAAGGAGAAGAACCTGATCAACAACCTCTATCGGGGGTCAGGGGGCGCAGGGTTGTCAGGGGGAGACCTGTATAAAGACGTGGATACCACTTCCGAGGCCGTGCCCATCATCAGTAACCAGGGGGCCATCAAGGTCCAGATACAGGGAAGCATGGCTGACTCATTCCCCGAGGTGGTCTCCAGCAGCACCCGACCCCAGACCCCAGTCCCCATGGAAGGACACTCCTTCACCAAGATGTCCTCCAGTCCACCCAGGAACAACTGTGTCTGGCCAGGAATCTCCTCCAGCCATCTGAAAAtGACCTCGTTTTCCTCACCGAAGAGCAAGCGTCAGAAGAAGTACCGTAGTGTGATATCAGACGTGTTTGACGGGACCATTGTCAGCTCAGTGCAGTGTCTGACCTGCGACAGGGTGTCAGTGACCCTAGAGAACTTCCAGGACCTGTCCCTGCCCATCCCAGGTAAGGAGGACCTGGCTAAACTCCACTCCTCCTCCCATCAGACGTCTCTGATCAAGGCTGGCTCCTGTGGTGAGGCCTACGCTGCTCAGGGATGGGTCGCCTTCGTCATGGAATACATCAAGAGCTGGTTCTGGGGTCCTGTGGTGACCCTACAGGACTGTCTGGCTGCCTTCTTTGCCCGGGACGAGCTGAAAGGAGACAACATGTACAGCTGTGAGAAATGCAAGAAATTACGGAACGGAGTGAAATTCTGTAAAGTTCAGAGTGTTCCTGAGATCCTGTGCATCCACCTGAAGCGGTTTAGACACGAGCTGATGTTCTCCACTAAGATCGGGACTCACGTCTCCTTCCCATTGGAGGGCCTGGACCTGCAGCCCTTCCTGGCCAAGGATAGCTCCGCCCACACCACCTCCTACGACCTGCTGTCGGTCATCTGTCACCATGGCACCGCCAGCAGTGGTCACTACATAGCCTACTGCAGGAATGACCTGAACAACCTGTGGTATGAGTTTGACGACCAGAGCGTCACGGAGGTGTCAGAGTCCTGCGTCCAGAACGCTGAGGCCTACGTCCTGTTCTACAAGAAGAGCAACGAGGAGgcgctgaaggagaggaggagggttacCGGTCTACTGAACATGACAGAGCCCAGCCTGCTACAGTTCTACGTCTCCAGACAGTGGCTCAACAAGTTCAAGACCTTTGCTGAGCCTGGACCAATCTCCAACGACAACTTCCTCTGTTCACACGGAGGTGTGCCGCCTGCCAAAGCAGCCTTCATTGATGATCTGGTCGTGATGCTGCCTCAGAACGTGTGGGACCACCTCTACAGCAGGTATGGAGGCGGGCCTGCTGTCAACCACCTGTATGTGTGTCACACGTGCCAGACGGAGATTGAGAAGTTGGAGAAGAGACGCAAGACTGAGTTGGACATGTTTGTCCGGctgAACAAGGCGTTTCAGGAGGAAGAATCTCCAGTGGTCATATACTGCATCAGCATGCAGTGGTTCAGAGAGTGGGAGGCCTTCGTTAAGGGAAAGGACAATGATCCACCAGGACCAATCGATAACTCTAAGATAGCCATCAACAAGAACGGTCATCTAACACTCAAACAAGGGGCTGACTCTGGGCAGATCTCGGAGGAGACCTGGAACTTTCTCCACTCCATGCACGGAGGGAGTCCGGTCGTCACGGTCCGGCCCAACGTCTCTCACCCCGAACCGGAGGCGTCCTCGCAGTCCGAGGAGAAGATGGAGGTGGAGACACGCTCCGTTTAACACTACCTAGTTAACACCAACAGGAAACCCCCCAACGCCAGCCCTgaggacaacccccccccccccaacgccAGCCCTgaggacaacccccccccccccaacgccAGCCCTGAGGACAACCCCCCCAACGCCAGCCCTGAGGACAACCCCCCCCCAACGCCAGCCCTGAGGACAACCCCCCCCAACGCCAGCCCTGAGGACAACCCCCCCCAACGCCAGCCCTGAGGACAACCCCCCCAACGCCAGCCCTGAGGACAACCCCCCCCCAACGCCAGCCCTGAGGACAACCCCCCCCAACGCCAGCCCTGAGGACAACCCCCCCCAACGCCAGCCCTGAGGACAACCCCCCCCAACGCCAGCCCTGAGGACAACCCCCCCCAACGCCAGCCCTGAGGACAACAACTAAAGCCTTTTTATTTTGCACTTGGATCTTTTTTTACTTCAAAAGCATTCGATCAAACGACCCCTTTAACCTTGACCTCCACAACATGACGTCTCTTCTTGAATATTGGACAGAAGGAATAAACTTGTCTGAAAATGATATGACAGTCATGTTTGTATATAGATGTATAAATATCTAATTTCTATTAGCACTGTAAAATAATGCATGGAAACGGTGTCTGGTCGTTTCCAGAACTAAACGGTGTCTGGTCGTTTCCAGAACTAAACGGTGTCTGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCTGGTCGTTTCCAGAACTAAACGGTGTCTGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCTGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAAACGGTGTCCGGTCGTTTCCAGAACTAAAACGGTGTCTGGTCGTTTCCAGAACTAAAACGGTGTCTGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCTGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCTGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAAACGGTGTCCGGTCGTTTCCAGAACTAAAACGGTGTCTGGTCGTTTCCAGAACTAAAACGGTGTCTGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAAACGGTGTCCGGTCGTTTCCAGAACTAAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCTGGTCGTTTCCAGAACTAAGCGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAAACGGTGTCTGGTCGTTTCCAGAACTAAACGGTGTCTGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAACGGTGTCCGGTCGTTTCCAGAACTAAGCATTTATCTGTTTTGTGTCCAGCTAGAAGGATTGTTTCTGCTTATGTTCATTATTTTGTTTTCTCTTGACCAAAAATTGAGCCGATGTCACTCTCTTAAGATGTCTTGTTTGATGCAAATGGGAAAAGCTAGAAAAATCACATCTTTACTATAGATATTAAAAAGTTATCTTACCTGTTCTAGAAGTGAATGGTTAGAGAAGTGCTAGCTCTTACATGTTCCTTAAAGCGAAGAAGAAGGATCTTAAAAGATGAGATGATCAAGAAGGGATATACTGAATAACTAAATTATATCGTCTCAAGAAGGACTGGTATGTTTTGCTCTGTAGATGGGTTAAGATGATGGGTTTTAAATGTACCAGTGCGTCAGGGTTAGAAGAACTAACGTGAGTCCGGAGTCCCAGCACTTCCTTGttatttatccccccccccccccccccccccccccatgggccAGACCAGGGGGCTGATTTACTATTGTATCCTAttcccaacatagtgcactacattgggccAGCGCcccatggaaccctattccctatatagtgcactactttgggccaGCGCcccatggaaccctattccctatatagtgcactactttgggctAGCGCcccatggaaccctattccctatttagtgcacgaCTTTGGGCCAGCGCCCCATGGGAAATAGTGTGGAGGCATTTGATGTTAATAGCCTTTTTGCATAAAATATGTGTCAGGCAGGCTCTCAGTTCACCATGCATGCTTTAGAGGGGACCCCAGTCACTCAATCaagccagggttggggtcaatcccATTTCCATCTAGGAAgtcaactgaaattccaattcggATTTTCCTCAATGCTTCTCTGTGAGAAAAAATGTGGAacggaatttaaatggaattgaccccaaccctgacacgCTAATCATTGAAAAACTTGCTGGCCACATTATCATATTAAATTGCATGTAAAATTGCTCACTCGTTGCATAATATGTACTCAATGAATCACAAACTTCTGTGGCTATCTGAAATGTACAGAATTACATAACAATCAGTTGTGTCCGTGGAAGACATTAATATGTGTATAAGGGTATGTTGCTTATGGTATGTGGTCCCCGAAGGCCGAAGAAGCAATCTAGATAATGCTGTAGGTATGTGAACTATAGGGCATAATGCATATCATGAACACGTCTGTTCTGATTGGCTGATATGATTCCAATAAACCCTGATGATGAAAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863315 lncRNA upstream 9533 89079923 ~ 89139486 (+) False slc25a24l
TU863349 lncRNA upstream 11088 89042687 ~ 89137931 (+) False G759680
TU863350 lncRNA upstream 11088 89042687 ~ 89137931 (+) False G759680
TU863348 lncRNA upstream 11088 89137597 ~ 89137931 (+) True G759680
TU863352 lncRNA upstream 100242 89048213 ~ 89048777 (+) True G759682
TU863421 lncRNA downstream 16753 89240459 ~ 89241436 (+) True G759741
TU863426 lncRNA downstream 22619 89246325 ~ 89247348 (+) False G759745
TU863428 lncRNA downstream 22619 89246325 ~ 89247266 (+) True G759745
TU863430 lncRNA downstream 24774 89248480 ~ 89249661 (+) False G759746
TU863431 lncRNA downstream 24774 89248480 ~ 89249661 (+) False G759746
XM_036986711.1 mRNA upstream 35970 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA upstream 35970 89094836 ~ 89113049 (+) False fubp1
XM_036986713.1 mRNA upstream 35970 89094836 ~ 89113049 (+) False fubp1
XM_036986714.1 mRNA upstream 35970 89094836 ~ 89113049 (+) True fubp1
XM_021614152.2 mRNA upstream 54616 89074625 ~ 89094403 (+) False slc25a24l
XM_036986720.1 mRNA downstream 1383 89225089 ~ 89291341 (+) False LOC110530860
XM_036986721.1 mRNA downstream 2421 89226127 ~ 89291341 (+) True LOC110530860
XR_005052998.1 mRNA downstream 37908 89261614 ~ 89263601 (+) False LOC118965581
XR_005052999.1 mRNA downstream 37908 89261614 ~ 89263950 (+) True LOC118965581
XM_036986722.1 mRNA downstream 73246 89296952 ~ 89321553 (+) True pigk
TU863314 other upstream 54625 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 54679 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 287191 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 287191 88861279 ~ 88861828 (+) True G759598
TU863172 other upstream 447944 88697974 ~ 88701075 (+) False G759556
TU863518 other downstream 344297 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 472714 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 936564 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 937608 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 1150381 90374087 ~ 90389077 (+) False G760718

Expression Profile