RNA id: XM_036986721.1


Basic Information

Item Value
RNA id XM_036986721.1
length 3814
RNA type mRNA
GC content 0.58
exon number 12
gene id LOC110530860
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89225089 ~ 89291341 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCAGGCTGGGGCTCAACCGGGGCTCTCGGTCTGTCGGTGCCGTTCCAATCCGCGGATTTGGTTTTAGTCTGTCAGGCCAATTGAATGGAGTGATTTGGTAAAGTAAACTACGTGAGATGAGGACGAAGTAAATACTCCAATGTTTACATTGTGAATTAGTGAAGTTTGATCAAAGAACACCTACCTGCGAACAACTCCACCTTGTACTATCAATCAAGAACGAGgtACCCCATTCTGCAGCAGGTGACTGAGCAGCACAATGAGACGTCAGTAGTCCGCCTCCGTAGCATGGCCACGTCACGTTCCTCACGCGTCACAAGGTCATCAGTCGGGCTCAATGGATTGGACGAGAACTTCTGTGGCCGAACCCTCAGGAACCGCAGCATCGCCCAGCCGGAGGAGGTTCAGGGGTCACCGCTCCCCGGCAGCAGGGCTCCCCGCTCCCCCAAGAAGAGACAGGACGCCCAGGCTGGGAGCTCAGAGAAGCCTGGGGGTCACCAGGGAAAGGTAACCCACCACAAGGCCTCCCCAGTGGACAGGGAGACATGGCCGAGCCCCAGGAAGAGGGGACTGTcctgctcagagagagagagtgatgggtgTGGGGGTTTGGACCAGGCTGAGAACtgtgaggggagggggaaggagacgtCGGGGGCTGGTGGGAGAGATGCTTCTCTGCTCCTCAAAAGGGCCAAACGGTGTTCCCGTCACGGGGAGTCGCAGGGCCCCGAGGACGACCCCTCTTCTGCACCCGCCAAACCTGACATCCCCCCATCCTCCTGCACCCCCCCAGCGACTGTCAAGGAGAACAGTGAAGAGGGTGACCCGCTCAACCTAATCTGCACCgcaccctcttcctcttctccacagAACCTCAACAAAGaggaaggtgaggaggaggaggaggaggaggacagcggCGGCCATATTGAGAGCGACGGCCATGCTCAGCAGCCCCTGAACTCCACTTCCCATAATCCCCCTGTTCCGCCCCAGAACTCAAACTCCCATAAATCCTCTACTGGGCTGGGACAGACCAGCAGTAGCTTTGACGCTCAGACAATCCCCCCGGGTGCCAGCGCTGCCATTAACACCAGCTGCCCAGGTCCCAGTCCCGCACTGCTGAACGGCGGCCAGATGGGGGCGCCCTGCCCCTCGCCCCCAGACCCCATAGTGCCTTGTAGAAACTGTGATCCTGtgcaggaggaggaggttagGGACTCTGGGGAGTATTCTGCTCCTCCTCTGGCCTCCTTTGAAGAGGACTCCTCCACCCCACACCTGTCAGTcagggaggaggaagtggagtTGGATGTAGTGGGGGACTCGGTGTGTCAGGAGGAGGAAGTGACAGCGaccgaggaggaggaagaggaagaggaggaggaggagagtaccAACGGGAGAAGTAATGGTTGGCCACTGGTGCAGGATGCTGTTGCCACCAGTATCATCAACGTAAACCACAACATcacaaacaacaacatcaacaactcaGGAGAATCCACCATGCCTTTGCTAGCCCCCCAGACCCACTCAGAGACCCCTTCTGTCTCCGGCACTTCGCCCCCGTCCTTCACCCAACCCCACGAACACCAATACACCCTGAGGACTTCGCCCCGGAGAGCTGGGGCCCCCTCGTCCCCCAAACCCTGCTCCCCTCCCAGAGACCCTCTTCGGGACAACGGCCCTCTGAGAGAGGGGGCCTGTCGGAGGCTGGATCTGGACGCTACTCTGGCTACTTCTACCCCTTCTTCAGGTCCCTCCAGCACCCAGGCCAGGGGAGggtctctcccatctcttctgtCGGTTCCCATGGAGCAGGGAGCCGGTGGGGATGACAAGGACAGGGTAGTAGGGGACGGTCGGGACTACGGGGAGCTCCGAGAAGGCGCCCGGGCAGCCAGTAAGGAGGTTCCGGTAGGAGGAAgccagcagcaggaggaggagaagcaggtGGAGGACGAAGAGGAACCAGATGTGTATTACTTTGAGTCGGACCACCTGGTGCTCAAACACAACAAAGAtTACCAGAGGTTACTCCAGACTGTAGGTGTGTTGGAGGCCCAGAGGACTCAGAGTATACTGGACTTGGAGCGTCTGGCCAGACAGCAGAGAGAAGCTCTCCAAGACCCGGTCAGCTTTGTGGAGCAGCTGCAGAAACAGGTGGAACTGGGCATGCCGCGGCCCCAGAGAGTGGTTCAGCTGCCAGACATCTCATGGGACCAGTACACGTCAGGACTGGGAGACTTCGAGAGGGAGTTCTGTGACAAGAAACGCAAAACCAGGAGGCTCAAACTCATATTCGATAAGGTCAGGTTACCAGACCGACCAATCAGCCCCTTGGATCCCAAGGACAAGGAGGGTGAATCGTCGACCCTGTACTCTGCTCTGCCCTCTAGTGATGCTCTGGAGAACAGCAGCCACTCACAGaTGATCCGAGGGCGGCTGTGTCACCAGAGTAAACCTGACACCTTCAACCAGCTGTGGACCGTGGAAGAACAGaaaaaGCTGGAGCACCTGCTGCTGCAGTTTCCTCCTGAGGAGGTGGAGTCTAAACGCTGGCAGAAGATAGCTGACGCCCTGGGCAACAGGACCGctaaacaggtGGCCAGCCGCGTACAGAAGTACTTCATCAAACTGACCAAAGCAGGAATCCCTGTTCCTGGGAGGACCCCCAACATGTGCATGTACAGCAAGAAGGTGTCCAATAAGAGGCAGCACCACCTGAACAAGCACCTGTACCGACCGTCTACCTTCCTGACGTCATATGAGCCTCCCGTCTTtatggaagaagaggatgagagagcGGCCTACTACAGCTCCCTGCAGGACCCTGATGGAGACGACACGgatgAGGAGGGTGTACCTGTGGAGTTGAGACACCTGCCGGAGTACAAGGAGCTTCTGGAGCTGAAGAGGATGAAGAAACACAAACTGCAGGAGATCCAGGCTGAGAGTAGCATGGCCCTGCACCATGGATACAAGTGTGACGTGTGTGGTGTGGAGCCCATTCAGGGCGTGCGGTGGCATTGTCAGGACTGTCCCTCAGACAACGCTGTGGACTTCTGTTCCAACTGCTCCGACTGCCTGTACAAGACTGAGAGCCACACGCCAGACCACCATCTGGAGCCTGTCCATCACCATGAGACCTTCCTAGACAGGGACTACTGTCTGGCTCAGACCCCTGGATATAACTACCTGGACCCCAACTACTATCCTGCTAACAGATGACGGGAGCCACAGACTGGCCCCTGAACTCCAGCCTATGCCTCAGCCCAGGGGCCATAGTTTTAGTTACACACGAAGGGTCCCTAGCATCCAGGGGCCACAGACACCCAGCCTCAGCCCACACAGCTAGCCTACTACGACAACTAGCCTCCAGATCCCAGGGGCCACAGTCACCCAGCCTCAGCCCACACAGCTAGCCTCAGTCAGCTAGGCTACGACAGCTAGCCTCAGCTAGCCTCCAGATCCCAGAGTTCACAGTTTCAGCTACACCCCAGCGGCCCCTAGCCCCAGACTCAACCTACAGCAGCAACCAACTGGTAGTGTGTGGCTCATGGCGCCATGGCTCATGGCTCTGTCTCTCAGACCCGAATCTAGACGGTTCTCACACCAGCTACTCTGCTCACCCCGCCCTGCTAGCCCAGCAGACTGGCAGGAATCCcattggtggtggtggggggaggtGAAACTGGCTGCCCAGCAGACTCCATTTTGGCTCTAAGAAGAGGTCTGGGACACGCTCACTTCTCTGACTGGTTACCATAACAACCAACAAACTGAACAGAACAGTCTCTGAAAAA

Function

GO: NA

KEGG:

id description
K24536 ZZZ3; ZZ-type zinc finger-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863309 lncRNA upstream 2421 89221000 ~ 89223706 (+) True usp33
TU863395 lncRNA upstream 44801 89180675 ~ 89181326 (+) True G759723
TU863388 lncRNA upstream 70514 89155016 ~ 89155613 (+) True G759716
TU863315 lncRNA upstream 86641 89079923 ~ 89139486 (+) False slc25a24l
TU863446 lncRNA downstream 7038 89298379 ~ 89300155 (+) True G759755
TU863451 lncRNA downstream 28480 89319821 ~ 89652495 (+) True G759759
TU863458 lncRNA downstream 44666 89336007 ~ 89337833 (+) True G759765
TU863466 lncRNA downstream 61366 89352707 ~ 89354993 (+) False G759772
TU863467 lncRNA downstream 61366 89352707 ~ 89354993 (+) True G759772
XM_036986719.1 mRNA upstream 2421 89148990 ~ 89223706 (+) False usp33
XM_036986718.1 mRNA upstream 2421 89149019 ~ 89223706 (+) False usp33
XM_036986717.1 mRNA upstream 2421 89150913 ~ 89223706 (+) False usp33
XM_036986713.1 mRNA upstream 113078 89094836 ~ 89113049 (+) False fubp1
XM_036986722.1 mRNA downstream 5611 89296952 ~ 89321553 (+) True pigk
XM_036986724.1 mRNA downstream 268797 89560138 ~ 89575164 (+) False LOC118965583
XM_021614193.2 mRNA downstream 499569 89790910 ~ 89837790 (+) False yipf1
XM_021614191.2 mRNA downstream 499613 89790954 ~ 89837790 (+) True yipf1
XM_021614336.2 mRNA downstream 562125 89853466 ~ 89854375 (+) True zgc:113691
TU863314 other upstream 131733 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 131787 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 364299 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 364299 88861279 ~ 88861828 (+) True G759598
TU863172 other upstream 525052 88697974 ~ 88701075 (+) False G759556
TU863518 other downstream 276662 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 405079 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 868929 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 869973 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 1082746 90374087 ~ 90389077 (+) False G760718

Expression Profile