RNA id: XR_005052998.1


Basic Information

Item Value
RNA id XR_005052998.1
length 1227
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC118965581
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89261614 ~ 89263950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacactgagatacaCACTTACACTTTCAAAGGTATGCGTGAGCAGGTCCTCAGAGAAACAGGTTCAtataacaccctgatctgggtacaggttaatataacaccctgatctgggtacaggttaatataacactctgatctgggtacaggttaatataacaccctgatctgggtacaggttaatgtaacaccctgatctgggtacaggttaatataacaccctgatctgggtacaggttaatataacaccctgatctgggtacaggttaatataacaccctgatctgggtacaggttaataatacaccctgatctgggtacaggttaatataacaccctgatctgggtacaggttaatataacaccctgatctgggtacaggttaatataacaccctTATCTGGGTACAGGTCAGAGAAACAGGTTAATCTAACActctgatctgggtacaggttaatataacaccctgatctgggtacaggttaatataacaccctgatctgggtacaggttaatataacaccctgatctgggtacaggtcaGAGAAACAGGTTAATGtaacaccctgatctgggtacaggctaatataacaccctgatctgggtacaggtcaGAGAAACAGgttaatataacactctgatctgggtacaggtcagagaaacaggttaatataacaccctTATCTGGGTACAGGTCAGAGaaacaggttaatataacaccctgatctgggtacaggttaatataacaccctgatctgggtacaggttaataatacaccctgatctgggtacaggttaatataacaccctgatctgggtacaggttaatataacaccctgatctgggtacaggttaatataacaccctTATCTGGGTACAGGTCAGAGAAACAGGTTAATCTAACActctgatctgggtacaggttaatataacaccctgatctgggtacaggttaatataacaccctgatctgggtacaggttaatataacaccctgatctgggtacaggtcaGAGAAACAGGTTAATGtaacaccctgatctgggtacaggctaatataacaccctgatctgggtacaggtcaGAGAAACAGGTTAATGtaacaccctgatctgggtacaggttaatataacactctgatctgggtacaggttaatataacactctgatctgggtacaggttaatatatcaccctgatctgggtacaggttaatataaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863430 lncRNA upstream 11953 89248480 ~ 89249661 (+) False G759746
TU863431 lncRNA upstream 11953 89248480 ~ 89249661 (+) False G759746
TU863432 lncRNA upstream 11953 89248480 ~ 89249661 (+) False G759746
TU863434 lncRNA upstream 11953 89248480 ~ 89249661 (+) True G759746
TU863426 lncRNA upstream 14266 89246325 ~ 89247348 (+) False G759745
TU863323 lncRNA downstream 1147 89264748 ~ 89266944 (+) True G759661
TU863446 lncRNA downstream 34778 89298379 ~ 89300155 (+) True G759755
TU863451 lncRNA downstream 56220 89319821 ~ 89652495 (+) True G759759
TU863458 lncRNA downstream 72406 89336007 ~ 89337833 (+) True G759765
TU863466 lncRNA downstream 89106 89352707 ~ 89354993 (+) False G759772
XM_036986719.1 mRNA upstream 37908 89148990 ~ 89223706 (+) False usp33
XM_036986718.1 mRNA upstream 37908 89149019 ~ 89223706 (+) False usp33
XM_036986717.1 mRNA upstream 37908 89150913 ~ 89223706 (+) False usp33
XM_036986713.1 mRNA upstream 148565 89094836 ~ 89113049 (+) False fubp1
XM_036986722.1 mRNA downstream 33351 89296952 ~ 89321553 (+) True pigk
XM_036986724.1 mRNA downstream 296537 89560138 ~ 89575164 (+) False LOC118965583
XM_021614193.2 mRNA downstream 527309 89790910 ~ 89837790 (+) False yipf1
XM_021614191.2 mRNA downstream 527353 89790954 ~ 89837790 (+) True yipf1
XM_021614336.2 mRNA downstream 589865 89853466 ~ 89854375 (+) True zgc:113691
TU863314 other upstream 167220 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 167274 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 399786 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 399786 88861279 ~ 88861828 (+) True G759598
TU863172 other upstream 560539 88697974 ~ 88701075 (+) False G759556
TU863518 other downstream 304402 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 432819 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 896669 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 897713 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 1110486 90374087 ~ 90389077 (+) False G760718

Expression Profile