RNA id: XM_036986722.1


Basic Information

Item Value
RNA id XM_036986722.1
length 2133
RNA type mRNA
GC content 0.46
exon number 11
gene id pigk
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89296952 ~ 89321553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATATCATCAAAGAAGAAGAAGCACTACGTCATCTGAGGGCGATAGCTCTTCCTGTAGTAGCAACATGGCTAGCTGCTGTTCCCTGAAAGTATTGACACTTTTCAGCCTGTTTATTGTTCCTGGCGCGGTGGAAAGTAATAATATCGAGGCTAAAGCTGGTCAATTCTTCAGCAGTGGACACACAAACAACTGGGCAGTTTTGGTGTGCACATCCAGATTCTGGTTCAACTATCGTCATGTGGCCAACACACTATCTGTGTACCGTAGTGTCAAGAGACTGGGCATCCCAGACAGtCACATAGTTTTGATGCTGGCAGACGACATGGCGTGTAACCATAGAAACCCGAAGCCGGCCACGGTGTTCAGTCACAAGAACATGGAGCTCAACGTGTATGGAGATGACGTAGAGGTGGATTACCGTGGTTACGAGgtgACCGTTGAGAACTTCCTTCGTGTGCTGACGGGAAGGCTGCCACCCAGCACGCCGCGGTCTAAACGCCTCCTCTCTGAcgaccacagcaacatcctcaTCTACCTCACTGGTCACGGTGGGAACGGCTTCCTGAAGTTCCAGGACTCTGAAGAGATCAGCAACGTGGAGCTGGCCGACGCCTTTGAACAGATGTGGACAAAGAGAAGGTACAATGAGCTGCTGTTCATCATTGATACTTGTCAGGGAGCCTCCATGTATGAGAGATTTTACTCTCCTAACCTCATGGCCCTGGCCTCCAGTCAAGTAGGAGAGGACTCCCTGTCGCACCAGCCAGACCTGGCTATCGGGGTCCATCTAATGGACAGGTATACATTCTACCTGTTGGAGTTTCTGGAGGATATTCACCCTGCTAGCACCGCTAACATGAATGATCTGTTTAAGGTTTGTCCTAAGAGTCAGTGTGTGTCCACTCCGGGCCACCGTACAGACCTTTTCCTCCGGGACCCCGGAAACGTCCTCATCACCGACTTCTTTGGCAGTGTCCGTAAAGTAGAGATCACCATGGAAACCATTAACCTGACAGCTCCCATGGTGCATCTGGCTGTGGAAAGACCAGTAAGTGAGCTGAAGACCGAGAGCCAGTCATATGTGGACCAACTACCAGTGGCTGAGATTATACACCAGAAACCAAAGCAGAGGGACTGGCACCCTCCAGATGGTTTCATCCTGGGTTTGTGGACTCTCATCCTCCTGGTCTTCTTCAAGACGTACGGCGCCAAGCACCTTAAGCACATCTTCTAACACCTGACCTTTTGAAGCCCGACCTCTGACCCATTTCTGCTCCTTGTGCAGTTTGCACCAGTTCCCTTGGCTTCCTAGATTTGAAAGAGGACTGGTATAGGACTCATGGTGAATACTCTAAAGCGCAGGCTTTCGTCCATCCGATTATTCTAAATGCGCGGGGAGCACTTCAGGATGAAGGACAGACAATTGGGACGCGGTGTTGGCAAGGTCCCAATCTTCTGGATTACTAGAGAAGACTACAAATACATTATTAACAGGGAATGAATGGCGCAGTCTTTTAGTGGTAATTGCctttctagtcattctatttctatgtttattAACATTATCGAACGGGGCGATCTgtgattggtacatccattttgttattgtttgaagaGCAGATTGTTTATGTTTAAACTCTGAACTGTGTTGGAGAGAATGTGGTGACACAACACCTGACCTGCACAAAGACACACATTGTTGTGCCTTTCTGGACATAAACAGTACTCTGACCACTCTCTATTTATTGTATGGAATCTGGTGAATAGGGGTTTAGAGTTAAAACACAACTGAAGATTAAAGGTTGGAAGCAGCGAATACTGGAAGAAACAATCCTATGTTtgttgtatttttattatttattgttgCATGGTTTAGAATTTTAAAGAGGGAGAACGGAAAAGGAAATTGAGGATAAAATGAAGGGTTAAAAAAGAAATACTGGAAAGCAATGGTCCCTCTCAGGAGagcagacggacggacggatgtGTTCTTTGAGATGGTTGATTGTCTTATTTGATGTCGTTTAAGGAAATGTGTGTGTTCTTTATTCCTTTATTTTGTGTCTGGCAGCAGAGCTGTCTTTTTCACCTCATATCTATAATTAAATTGATGGGACTGAAAGGCACTGAA

Function

GO:

id name namespace
GO:0050976 detection of mechanical stimulus involved in sensory perception of touch biological_process
GO:0016255 attachment of GPI anchor to protein biological_process
GO:0006508 proteolysis biological_process
GO:0034394 protein localization to cell surface biological_process
GO:0042765 GPI-anchor transamidase complex cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0003923 GPI-anchor transamidase activity molecular_function

KEGG:

id description
K05290 PIGK; GPI-anchor transamidase subunit K

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863323 lncRNA upstream 30008 89264748 ~ 89266944 (+) True G759661
TU863430 lncRNA upstream 47291 89248480 ~ 89249661 (+) False G759746
TU863431 lncRNA upstream 47291 89248480 ~ 89249661 (+) False G759746
TU863432 lncRNA upstream 47291 89248480 ~ 89249661 (+) False G759746
TU863434 lncRNA upstream 47291 89248480 ~ 89249661 (+) True G759746
TU863458 lncRNA downstream 14454 89336007 ~ 89337833 (+) True G759765
TU863466 lncRNA downstream 31154 89352707 ~ 89354993 (+) False G759772
TU863467 lncRNA downstream 31154 89352707 ~ 89354993 (+) True G759772
TU863480 lncRNA downstream 62907 89384460 ~ 89384998 (+) True G759785
TU863486 lncRNA downstream 76679 89398232 ~ 89399847 (+) True G759790
XM_036986720.1 mRNA upstream 5611 89225089 ~ 89291341 (+) False LOC110530860
XM_036986721.1 mRNA upstream 5611 89226127 ~ 89291341 (+) True LOC110530860
XR_005052999.1 mRNA upstream 33002 89261614 ~ 89263950 (+) True LOC118965581
XR_005052998.1 mRNA upstream 33351 89261614 ~ 89263601 (+) False LOC118965581
XM_036986719.1 mRNA upstream 73246 89148990 ~ 89223706 (+) False usp33
XM_036986724.1 mRNA downstream 238585 89560138 ~ 89575164 (+) False LOC118965583
XM_021614193.2 mRNA downstream 469357 89790910 ~ 89837790 (+) False yipf1
XM_021614191.2 mRNA downstream 469401 89790954 ~ 89837790 (+) True yipf1
XM_021614336.2 mRNA downstream 531913 89853466 ~ 89854375 (+) True zgc:113691
XM_036986748.1 mRNA downstream 540268 89861821 ~ 89911594 (+) False ndc1
TU863314 other upstream 202558 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 202612 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 435124 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 435124 88861279 ~ 88861828 (+) True G759598
TU863172 other upstream 595877 88697974 ~ 88701075 (+) False G759556
TU863518 other downstream 246450 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 374867 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 838717 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 839761 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 1052534 90374087 ~ 90389077 (+) False G760718

Expression Profile