RNA id: XM_036986724.1


Basic Information

Item Value
RNA id XM_036986724.1
length 3755
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC118965583
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89560138 ~ 89659347 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACTTCTGGCTATGCGCATGTAATGGACAGACAAGACTCACTGACGAGCCGCCTGGAGAGCCCGATATCAGCCAAACTGGAAACACTGCAGGCCAAGAAAAACTTCTCTGTCAGCCACCTGTTGGATCTGGAGGAGGTGCGGGAGATGGTAGGGGTTCAGGCCAATGAGAGCGCCGGGGATGCGGGAAGGAGCGTGGTGGAGTCCCCGGGGCTGACCAGCGGCAGCGATACGACGCAGCAGGAGAATGAGCATGTGAGTtctgaggagaagaagaggaagcatCGTCGTAACAGAACAACCTTCAACAGCAGTCAGCTGCAGGCACTAGAGAGAGTGTTTGAGAGGACACACTACCCTGACGCCTTCGTACGGGAGGACCTGGCACGCAGGGTTAACCTCATTGAGACACGGGTACAGGTGTGGTTTCAGAACAGGAGGGCTAAGTTCCGTCGTAACGAGCGTGCTATGCTAGCCAGTAAAAATTCCTCCATGATGAAGTCCTACTCTCGTGACCTCACAGCAGTGGAGCAGCCAATCGCACCTCGACCCAACGACTACCTGTCCTGGGGCTCCTCTTCACCCTACAGTGCCATGGCAGCGTACCCCCCCACATGTTCTCCCACCACCTCAGCCCAGGGGATGAACATGGCTAACAGCATCGCTAACCTCCGGCTCAAAGCCAAGGAGTACAGCCTCAACCAGGTGCCTACTGTCaactgatgaagaggaggaagataaaTGCTTCTCCTAAAGTCTAGAGAGTTCTACAGAGAAATCACGTTTACCAAAGGACGACACAACAAGCAGTTCAAACTGCAGTCTTGGTTTTTAACGGCACGTCACAATGTCAATgaatgtgtttagtgtgtttttatgtgcGTGATCGTCTACAGAAAACTGGTCCTACACGCCAGAGACATTTGAGAGCATATCCTGTCCAGCTAAGTAGCCACGATGGCCAATGAACCAGAGGGTAACTGACTGTATTCATCATTGTTATACAGTTTTACTATCAACGTTCCTCTCCTCACTCTGGCACCAACAGGATATGTGCCACCTTTGCCTTAGAATTTCAGAATTTCAAACATTTGGGGACTTTTGGGAGACTTGTATTGATATCTAAATTTTTGGGCTGGTTTGAAAActtttggaaagttttttttgtttAATTATTTTGAGAACTCTGGACTTATGATGAATTCTAACCCGAAACAAAGACACAAACAGTCAGACAAACttttttaaccctaacccttttcccaGCACTGGCCTGAGGAGCCAAGCCTTCTCTCCTGGGGTTATATGAGGAGCCAAGCCTTCACTCCTGGGGTTATATGAGGAGCCAAGCCTTCTCTCCTGGGGTTATATGAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATGAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCATGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATGAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCACGCCTTCTCTCCTGGGGTTATATGAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAACCTTCTCTCCTGGGGTTATATGAGGAGCCAAGCCTTCTCTCCTAGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGAGTTATGATGGTACTATATGGGACTTGGAAAGAAGCCCGAACAACGTCTTGTCCTGTTAGCATTGTTGgtattattttcttattttcaGTTGGAGACGGTCATCTTTTGTTAATGCCTTACACAGCCACAGCTCGAGCTGATTCAACATGTGTTGATCAACCCCATTAGTCTTTTGAATTGAATAAGGTCTAATAGCCTCTGTTTATATCCTGATATATCTTTAATCGACCCCATTAGTCTGTTTACTAAGGACTAACAGATTAATAGCCTCTGTTTATACCCTGATATATAGTAACGACTCTCTGCAATAAAATAGATGCTGTCATTCACAGAATAATTCACTGTACTGACACCATTAGTAACGACCCTCTGCAGTAAAAGAGATTTGGTCATTCACAGAATACTTCACTGTACTGACACCATTAGTAACGACCCTCTGCAGTAAAAGAGATGTGGTCATTCACAGAATACTTCACTGTACTGACACCATTAGTAACGACCCTCTGCAGTAAAAGAGATGTGGTCATTCCCAGAATACTTCACTGTACTGACACCATTAGTAACGACCCTCTGCAGTAAAAGAGATGTGGTCATTCACAGAATACTTCACTGTACTGACACCATTAGTAACGACCCTCTGCAGTAAAAGAGATGTGGTCATTCACAGAATACTTCACTGTACTGACACCATTAGTAACGACCCTCTGCAGTAAAAGTGATGTGGTCATTCCCAGAATACTTCACTGTACTGACACCATTAGTAACGACCCTCTGCAGTAAAAGAGATGTGGTCATTCACAGAATACTTCACTGTACTGACACCATTAGTAACGACCCTCTGCAATAAAAGAGATGTGGTCATTCCCAGAATACTGACACCATTAGTAACGACCCTCTGCAGTAAAAGAGATGTGGTCATTCACAGAATACTGACACCATTAGTAACGACCCTCTGCAGTAAAAGAGATGCTGTCATTCACAGAATACTGACACCATGTTAGCGCTGCAACGTTGTAGGAGCGTCTCaatgttctaatgatctaaacATTTCAACCTGCAGACTCATAGAGGGAAACATGTCTATAAAGGATTTGTGTTAAATGTGTATTTGTTAGAGAGCTGTATTAGTTTTACAAAaatcatatacactgagtgtacaaaatagtaggaacaccttcctaatattgagttgcgctcTACAAATGAAtatgatccttcgatgtcggctcttcccatcattgtgaagcagaattcaccaagcgttggattgttcacccactaatagggaacgtgagctgggtttagaccgttgtgagacaggttagttttaccctactgatgatgtgttgttgcaatatgGAGACTCTCACGACTCTTTACggcccccacaagtgtcacggaactcatctgaaggtaacctggaaaggctttaaaaaatgaatggaagtatactgaacacaacatgtaaagtgttggtcccatttttgatgagctgaaataaaagatcacagaaatgttccatacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863511 lncRNA upstream 57136 89497969 ~ 89503002 (+) True G759813
TU863503 lncRNA upstream 126739 89432857 ~ 89433399 (+) True G759805
TU863494 lncRNA upstream 141803 89416392 ~ 89418335 (+) True G759798
TU863486 lncRNA upstream 160291 89398232 ~ 89399847 (+) True G759790
TU863480 lncRNA upstream 175140 89384460 ~ 89384998 (+) True G759785
TU863546 lncRNA downstream 14173 89589337 ~ 89604334 (+) True G759845
TU863549 lncRNA downstream 15667 89590831 ~ 89605556 (+) False G759846
TU863550 lncRNA downstream 15667 89590831 ~ 89605556 (+) True G759846
TU863552 lncRNA downstream 19290 89594454 ~ 89608337 (+) False G759847
TU863553 lncRNA downstream 19290 89594454 ~ 89608337 (+) False G759847
XM_036986722.1 mRNA upstream 238585 89296952 ~ 89321553 (+) True pigk
XM_036986720.1 mRNA upstream 268797 89225089 ~ 89291341 (+) False LOC110530860
XM_036986721.1 mRNA upstream 268797 89226127 ~ 89291341 (+) True LOC110530860
XR_005052999.1 mRNA upstream 296188 89261614 ~ 89263950 (+) True LOC118965581
XR_005052998.1 mRNA upstream 296537 89261614 ~ 89263601 (+) False LOC118965581
XM_021614193.2 mRNA downstream 215746 89790910 ~ 89837790 (+) False yipf1
XM_021614191.2 mRNA downstream 215790 89790954 ~ 89837790 (+) True yipf1
XM_021614336.2 mRNA downstream 278302 89853466 ~ 89854375 (+) True zgc:113691
XM_036986748.1 mRNA downstream 286657 89861821 ~ 89911594 (+) False ndc1
XM_036986747.1 mRNA downstream 286658 89861822 ~ 89911594 (+) True ndc1
TU863314 other upstream 465744 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 465798 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 698310 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 698310 88861279 ~ 88861828 (+) True G759598
TU863172 other upstream 859063 88697974 ~ 88701075 (+) False G759556
TU863611 other downstream 121256 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 585106 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 586150 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 798923 90374087 ~ 90389077 (+) False G760718
TU864805 other downstream 821758 90396922 ~ 90400472 (+) True G760718

Expression Profile