RNA id: XM_021614193.2


Basic Information

Item Value
RNA id XM_021614193.2
length 1748
RNA type mRNA
GC content 0.45
exon number 10
gene id yipf1
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89790910 ~ 89837790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATGCGATGATTTTTATGTGCTGTTTCGAGATCAGATCATTTGACTATTATTTAGAAAAACGAAAATGCGACCGGAAAAGGGAGCTGAGTTTACCTTACACATATTTTCTTACTTCTTTAACTGCTGAGAGGACTCTTGATTAGTCTCCTACATGGCGGCTAACAGCGATTTCCTCTTAACATTTCAAGaatttGACAGTTCTGAGAGCCATTTGGGAGGGAACGGAGATGCGACTACCATCAGTATCGAGGACACAGGGGCAGGAAGTCACAAACCTCAGAAACAGAGGAGATCTGCACCGGTGACATCCTTCGAAGAGGACAATGACCCATTGGCTAATGACGACAAGACTGAGCTGTTGTCTGGGCAGAAGAGAAGTGCTCCTTTCTGGACCTTTGAATATTATCAGAGATTCTTTGACGTAGAGACACACCAGGTGAGAGAGAGAATCCTGGGGTCGTTATTGCCATGGCCAGGGAAGAACTTTGTCCATCTCTACATCCGCAACAACCCTGATCTTTATGGTCCCTTCTGGATCTGTGCTACTCTGGTTTTTGTCATCGCCATCTGTGGAAACATCTCTGACTTCCTGGTTTACCTGGGGAATCCACAGTATAAATACGTCCCAGAGTTCCGGAAAGTGACCATTGCGGCCACGGCGATCTACAGCTATGCGTGGCTGGTTCCCCTGGCCCTGTGGGGCCTGCTGGTCTGGAGGAACTCCAAGGTTATGAACAGAGTTTCTTACTCATTCCTGGAGATCGTCTGTGTGTACGGATACTCCCTGGCCGTCTACATACCTGCTGTGgtgttGTGGATCATCCCGAACGAGGCCGTTAGGTGGTTTTCCATTGTtgtggctctctgtctctctggttccATCCTGGTCTTGACCTTCTGGCCCGCCGTCCGTGACGACCAGCCCCGGGTTGCCATAGCGATCATGACGGCCATCGTGGCACTCCACATCCTCTTGGCGTTCGGTTGTAAGGCTTACTTCTTCAGTACGTTGGAGGTTAAACACACTGCTGTTGATGCTGCGGTGGACCATGGAACCAAGTCGTCTCCAACCATGAAGATGCACAGAACTAATACAATGTCCTGAGGTAGAATCAAGTTGCTGTGGCGATGGTGTCATGGTGTCGTCTTGGTTACCGACCTGCTGCACCGACCTTGCCTGGGTGGGTCTTCCTGCTAAAAGCCCTTAAAGACACAGTAACGTGTTAcagcacgacacacacacacacacacacctggattgtaatcATTTggtaccaaatggaagaaaatggtCTGAAACAATAATAAACGCATATTTGCGTTTTCTGTTGCAtagtgttttaaaatgtttttcatgtgtatgtactaatgaacacgaccctggtcCGAAGACCTGGGTTAtttaccaaatggcaccctattccttatatagtgcactgcttttgaccaggaacCCTATaatgcactatagagggaatagggtgccatttggaacttcTGGAAATGGACACTGGGTGACAACAGAATGTTTTTTCTAATGGGATGGTGTCTGAACTGTCTGCCTTAACGATATAGAACTAAACATGAGTTGTGTTACTGGGTAGAGCCAGTCCCTTCCTTGTTTAACTAGTCATAGTTttactgttatatatatatataaatatacaacTTGATATTGATAAGACACTTCACAAAAAAATGTCATTTGAAAGACGCTTCTTTGTATTAAAATGTTTTTCATTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863662 lncRNA upstream 15998 89773677 ~ 89774912 (+) False G759937
TU863667 lncRNA upstream 15998 89773868 ~ 89774912 (+) False G759937
TU863660 lncRNA upstream 15998 89774536 ~ 89774912 (+) True G759937
TU863670 lncRNA upstream 16448 89773677 ~ 89774462 (+) False G759937
TU863675 lncRNA upstream 16516 89773677 ~ 89774394 (+) False G759937
TU863725 lncRNA downstream 17069 89854859 ~ 89855189 (+) True G759967
TU863728 lncRNA downstream 19669 89857459 ~ 89857740 (+) True G759970
TU863737 lncRNA downstream 74079 89911869 ~ 89912304 (+) True G759979
TU864478 lncRNA downstream 77180 89914970 ~ 89915169 (+) True G760491
TU864487 lncRNA downstream 85270 89923060 ~ 89924400 (+) True G760498
XM_036986724.1 mRNA upstream 215746 89560138 ~ 89575164 (+) False LOC118965583
XM_036986722.1 mRNA upstream 469357 89296952 ~ 89321553 (+) True pigk
XM_036986720.1 mRNA upstream 499569 89225089 ~ 89291341 (+) False LOC110530860
XM_021614336.2 mRNA downstream 15676 89853466 ~ 89854375 (+) True zgc:113691
XM_036986748.1 mRNA downstream 24031 89861821 ~ 89911594 (+) False ndc1
XM_036986747.1 mRNA downstream 24032 89861822 ~ 89911594 (+) True ndc1
XM_036986753.1 mRNA downstream 79252 89917042 ~ 89932074 (+) False best4
XM_036986755.1 mRNA downstream 80467 89918257 ~ 89932074 (+) False best4
TU863611 other upstream 94003 89696420 ~ 89696907 (+) True G759892
TU863518 other upstream 131563 89568003 ~ 89659347 (+) True LOC118965583
TU863314 other upstream 696516 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 696570 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 929082 88861079 ~ 88861828 (+) False G759598
TU864640 other downstream 322480 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 323524 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 536297 90374087 ~ 90389077 (+) False G760718
TU864805 other downstream 559132 90396922 ~ 90400472 (+) True G760718
TU864957 other downstream 862505 90700295 ~ 90709652 (+) True LOC110530875

Expression Profile