RNA id: XM_021614336.2



Basic Information


Item Value
RNA id XM_021614336.2
length 910
RNA type mRNA
GC content 0.46
exon number 1
gene id zgc:113691
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89853466 ~ 89854375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttTATAGGTTATTATCCCACACTAGGGGATTCTAGTTTTATGTGTGATATTTGAGTCTGTTAAAAGCTATAACCGCATGGCTGAGAAAAAAGAGAACGTCTCCAAGTTTGAGATGTTGAAACTTCTGGAGAAgtgcaggaaagagagagacgatGCGGTGCACAGGGAGAGTATTATGAGGGAGAAGCTGAGACAGTACGAGTCCAGGATGAGGTCAACGGAGTTGCTGAAACAGAAATTCAAGACCATGACTTCGGAAAACAAGGAGCTGCGCAAGCATGTCAAGACTCTCCGCCAAGAGATAGGCCTGGAGGCGAGCCCCAAGTTCAACGGCAAAACCACCAAGGACATCATCTCTGACATGCACGAGAAGGAGCGCCAGTGCAGTTTCCTGGTGGAGAAAACAGGTAGACTCAGTTTGACCATTGATGATCTGACAGCAGAGCTGGCAAATGCTGTCACGTCCAAAACTCTTCTGGAATATCAGGTGCAGTCGTTACAGCAGAACCTGAAGGACATGACGAATAATCAACGCCGTTTGTTGAAACTCTGGGAGGATAAGAGATCTCAAAGAGAGCAGCTCACTCTCCCTGCAATAGGCCTGCCACAGAGGCCTGGAGAGAAATCTATCTCTCACAAGGGAGTACAAACAGAGATGTCCATCGATTCAGCCCAGAAACTCCCACACAACGCGTTTGAGACCAAACCTTCTCCTTCACCACGATCACGACACCACAAGACAAGGTCTTCTATAGATAAACAACAGGGATTAACAACATTGGGAAATGGTCATCAGCTGGGGAACGGCAACCATCATACACTGGGAAATGGCCTCCAGTTGGGAAATGGGAATCATCAACGTGAAAAGGAGGATTTATTTCACTATGAAACCAATGAACACATACTGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU863700 lncRNA upstream 39125 89796843 ~ 89814341 (+) True G759950
TU863706 lncRNA upstream 51733 89800542 ~ 89801733 (+) True G759954
TU863667 lncRNA upstream 78554 89773868 ~ 89774912 (+) False G759937
TU863660 lncRNA upstream 78554 89774536 ~ 89774912 (+) True G759937
TU863670 lncRNA upstream 79004 89773677 ~ 89774462 (+) False G759937
TU863725 lncRNA downstream 484 89854859 ~ 89855189 (+) True G759967
TU863728 lncRNA downstream 3084 89857459 ~ 89857740 (+) True G759970
TU863737 lncRNA downstream 57494 89911869 ~ 89912304 (+) True G759979
TU864478 lncRNA downstream 60595 89914970 ~ 89915169 (+) True G760491
TU864487 lncRNA downstream 68685 89923060 ~ 89924400 (+) True G760498
XM_021614193.2 mRNA upstream 15676 89790910 ~ 89837790 (+) False yipf1
XM_021614191.2 mRNA upstream 15676 89790954 ~ 89837790 (+) True yipf1
XM_036986724.1 mRNA upstream 278302 89560138 ~ 89575164 (+) False LOC118965583
XM_036986722.1 mRNA upstream 531913 89296952 ~ 89321553 (+) True pigk
XM_036986721.1 mRNA upstream 562125 89226127 ~ 89291341 (+) True LOC110530860
XM_036986748.1 mRNA downstream 7446 89861821 ~ 89911594 (+) False ndc1
XM_036986747.1 mRNA downstream 7447 89861822 ~ 89911594 (+) True ndc1
XM_036986753.1 mRNA downstream 62667 89917042 ~ 89932074 (+) False best4
XM_036986755.1 mRNA downstream 63882 89918257 ~ 89932074 (+) False best4
XM_036986756.1 mRNA downstream 67060 89921435 ~ 89932074 (+) True best4
TU863611 other upstream 156559 89696420 ~ 89696907 (+) True G759892
TU863518 other upstream 194119 89568003 ~ 89659347 (+) True LOC118965583
TU863314 other upstream 759072 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 759126 89080565 ~ 89094340 (+) False slc25a24l
TU863232 other upstream 991638 88861279 ~ 88861828 (+) True G759598
TU864640 other downstream 305895 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 306939 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 519712 90374087 ~ 90389077 (+) False G760718
TU864805 other downstream 542547 90396922 ~ 90400472 (+) True G760718
TU864957 other downstream 845920 90700295 ~ 90709652 (+) True LOC110530875

Expression Profile