RNA id: XM_036986748.1


Basic Information

Item Value
RNA id XM_036986748.1
length 2729
RNA type mRNA
GC content 0.51
exon number 18
gene id ndc1
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89861821 ~ 89911594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTTTACAATCGTGGTGTGGATTTGTCTCTGAGAAGCAGTTTCAGCCTCTCTTCTTCATGCTTTCGTCTCTCTGGACAGACTTTGAAAAAGGGGGGTCCTGACATGTCCTTTGAATGCATGTGCCGCGCTTATACGAGAAACTGCACAGAAGTGGAATATTCTCTAGGATTTTGACAACTAGCTGGcataatttgttttttttaaacacctttctttttttttgcagTCTCATCAAAAATCTTTATATCGAATCAAAATGTTTTCATCGGATCAAAGTTGTTGGTTCGTTCGTAAGGTGATATGTTGGAGAGCAGTAGCCAGTATGGCGTGGTctgtcctgctgctgctgcccaccACAGCTCTGTTTGTTCTTCTCAGCAGATTCAGTCTGTTTCACCCGATACTCTGGATGTCAGAATGCCTGTCCCTATTGACCAGTGCCAGTGCCATCTTCTCCTTTATTCTGCTATGTGGAGTGGTATTGATGGTGGGCTTCTTCAACCTGGAGTATTACACAGTGGTCCCATCCATCGCCTGTTCCAAGATCGCCCTCCTGGGTCAGGTGCTCCACCCCCGTCAGTTCGTCCACTCACTGGTGCACTGCATCATGGGTGTTGTAGTAGCTTGGTGTTGTGCCTTCACCATCGGAGGGCGCTACAGGTCCTTGGGGCACCCCTGTACACAGGATGAGAGTAGTGGTCCTGAGATGTGCCTGAATGAATACCACCTGGTGCTGCTGCTCGCGGGGGCCTTCATTGGCTACAGCCACAGCCTGGTGGGAGTGGTCTACAACATGAACTACGTTTCTTTCCACACCATGCAGCAATACAAGTACCTCCGCTTCAAGGGAGCTCTGCCCCTAGTGGTGAAGGCCAGTGCTGTTCAGGCCCTCTACTGTCTCAGGAGCTTCCTCCTGCTGTATTTCTTCATGGGATATGCACCACGAGCCTGGATCTGTAAAACACTTGACCTCAGCATCAACAGTTCAATCCATTCCCTGGACAGTGTGTCTAGTCTATTGGACCTGTCCCTCCTGTACCACCTGTGGATCAGTGggaccttcctcctcctcacctggTACATCACAGTACTGCTCTTCAGGATCTTTGTTACCGAGGTTTACAGTTTCCCTGTCCAGTCCACGTTCACAGAGGACGCCCACCAGTGCCTGCCCAAAGTTATCACTGGCACGCAACCAATGATACTGAAGTTCCTAGCCCTCCAGGACCTGGCTCTGCTGTCTCAACATTCTCCTTCTAGACGTCTGGAGGTGTTCAGTCTCAGCCAACCAGGCGGTCACCCTCACATCTGGACGGCCCTGAGTAAGGAGTGTCTGTCTCTGTTGTCTGACCTGACTGAGCGGCTGGTAGCCCACCATGACACTGTAGCTACTAACGGACGGGCCAAGTCCCAGTCTACAGGAAGCAACAAGCGGTCCACCACCTCCTCGGAAGGCTCCGTAACTTCTGTCGGTATGGAGGATATGAAGACTCCTCGGCCCAGCGCCCTGATCAGAACCCCTGGCTCAGTGTTCTTACGTTCCTCTGTCGGGGCGGGGCTGCGAACTCCCCTGACCACCCCCTTTACCCCGGACCTAGACAGCCCCTTCTCCTCCCCCGCCCTGCGGCGGCTCACTGGCCCCTTGGAGCCTCAGGGGGCCCTGTCCCCCGGCTTCAGCTCCATCCAGAGCCCTCACGTCATGAGGAGGGGCCCCAAACTCTGGTCTGCTTCTACAGACTCCCAGCTGAACGGCAGTCCTCCGCCATCTCCTGGTCCCGCCCCCAGCCCGTCCCAGGCCCAACTCAAACCCTCCTTCCTTGTTACCTTCCTACAGAACAGGAAGGACCAGGTTAAAAATTTCTTGGCAAAGCGGATGCTGATAATGTATCTGTTTAACAAGCTGCCAGAAGCCTCCAGTCAGGCCCTGTTTGCTGACAGCCAGGTTCACATATGGGCTCTGCAAGgtctgtctcacctGGTGGCAGCGTCCTTCTCTGAGGACCAGTATGGAATAGTTCAGACCACCCTGCCTACCATCCTCAGTACCCTACTGCTGTTACAGGAGgcTGTGGATCGTCACTTCAAGCTACCCCATACCTCCTCTAAACCAGGTCACTGTTCCTGCAGTATGGGAGATGACAGTTACAAGACGCTCCGCTTCGCCCTGCGATCCACCCTGAAGACCGCTGTCTACAGGATCACAGCCACTTTCGGAGGACACCTCCACGCTGTCCAGATGTCCGCAGAGCACCGGAAGAGACTGCAGCACTTCCTGGAGTATAAAGAGTGAAGGCGTGAGCGACATGCCCAGGACTGTGTCTGTCACTTAGCTGATGACAATGGTAGTGTGACTGAGTTGATAttggctgtgtgagtgtgtgtgtgtgtgtggctgtgcttCCTATTGAAAGATCTTGAAAGTGCCAAATTTGAATTGGTTGCCTAGACTACTGTTCGTAGGAAACGAGGTTGCTTCCAAGTTCTTGTTAGTTGGTTTTTGTTTTGTACTATACATTCTGTAATGAGCTCGTCAATAATGTTTTTGTCCATCTGACAAATTGCTTTGTTGTTTTCTGCTTTAACTGAAATGAACGGGATTGCGACATACGTCTAGGAAGTCTTTGAAAAGTCACCTCTAGGAAGTCTTTGAAAAGTCACCTCCAGCAACCTGAGTTCACGTATGATCAATGACTACATAGGGTATGAATAAAATGTTTTGTAAAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863728 lncRNA upstream 4081 89857459 ~ 89857740 (+) True G759970
TU863725 lncRNA upstream 6632 89854859 ~ 89855189 (+) True G759967
TU863700 lncRNA upstream 47480 89796843 ~ 89814341 (+) True G759950
TU863706 lncRNA upstream 60088 89800542 ~ 89801733 (+) True G759954
TU863667 lncRNA upstream 86909 89773868 ~ 89774912 (+) False G759937
TU863737 lncRNA downstream 275 89911869 ~ 89912304 (+) True G759979
TU864478 lncRNA downstream 3376 89914970 ~ 89915169 (+) True G760491
TU864487 lncRNA downstream 11466 89923060 ~ 89924400 (+) True G760498
TU864492 lncRNA downstream 37541 89949135 ~ 89949637 (+) True G760503
TU864502 lncRNA downstream 67996 89979590 ~ 89980502 (+) False G760511
XM_021614336.2 mRNA upstream 7446 89853466 ~ 89854375 (+) True zgc:113691
XM_021614193.2 mRNA upstream 24031 89790910 ~ 89837790 (+) False yipf1
XM_021614191.2 mRNA upstream 24031 89790954 ~ 89837790 (+) True yipf1
XM_036986724.1 mRNA upstream 286657 89560138 ~ 89575164 (+) False LOC118965583
XM_036986722.1 mRNA upstream 540268 89296952 ~ 89321553 (+) True pigk
XM_036986753.1 mRNA downstream 5448 89917042 ~ 89932074 (+) False best4
XM_036986755.1 mRNA downstream 6663 89918257 ~ 89932074 (+) False best4
XM_036986756.1 mRNA downstream 9841 89921435 ~ 89932074 (+) True best4
XM_036986749.1 mRNA downstream 20614 89932208 ~ 89947643 (+) False hectd3
XM_036986750.1 mRNA downstream 20614 89932208 ~ 89947643 (+) False hectd3
TU863611 other upstream 164914 89696420 ~ 89696907 (+) True G759892
TU863518 other upstream 202474 89568003 ~ 89659347 (+) True LOC118965583
TU863314 other upstream 767427 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 767481 89080565 ~ 89094340 (+) False slc25a24l
TU863232 other upstream 999993 88861279 ~ 88861828 (+) True G759598
TU864640 other downstream 248676 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 249720 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 462493 90374087 ~ 90389077 (+) False G760718
TU864805 other downstream 485328 90396922 ~ 90400472 (+) True G760718
TU864957 other downstream 788701 90700295 ~ 90709652 (+) True LOC110530875

Expression Profile