RNA id: XM_036986756.1


Basic Information

Item Value
RNA id XM_036986756.1
length 1800
RNA type mRNA
GC content 0.44
exon number 9
gene id best4
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89917042 ~ 89932074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAGGAAGTGTTCGAGGAAGGGGACAACCAACTTTATGATGAAATGTGATCAACAGTCATGTTTCTTCTTTgatctggtttcatccaaatatcatcaCATTTCATGAAAAACTGTTCAGGACCATTAAGGGTTCTTCCTCACTGAGAAACAACAGTTGTTGTTTGAAAATGTAGCCCTTTACTGTGACCAGTTTACCAACTTTATACCAATGTCCTTTGTGCTGGGTTTCTATGTAACCCTGGCGTTCAACCGTTGGTGGGGTCAGTACACCAGCTTCCCCCTGCCTGATAACCTGATGATGGTGGTGTCAGGGAACGTCCACGGGCTCGACGAGAGGGGCCGGCTGCTCCGACGCACCCTCATGAGATATGCtaacctctcctctgtcctcatcctGCGATCCATCAGCACTAGAGTACGCAGGAGGTTCCCAACCCTGGAGCAGGTGGTGGATGCAGGATTTATGACACCACTGGAGCATCGCCAGCTGGATGGTCTGTACTCTGACTTCAACAAGTACTGGATGCCTCTGACGTGGTTCACTAACCTGGCATCACGGGCCAGACAGGAGGGCCGGATCAGAGACGACGTCGCTCTACGACTTCTCATGGATGAGCTGAATAACTACAGAGGAAAGTGCAGCCTGCTGTTTCACTATGACTGGATCAGTATTCCTCTGGTCTACACTCAGGTAGTGACCCTGGCTGTGTACTCGTTCTTCGGCTTCTGTCTGATTAGTCGGCAGTTCCTGAACCCTGAGAAGGGGTATAAAGGTCACCAGCTGGATTTGTACGTCCCCGTCTTCACCCTGCTTCAGTTCTTCTTCTATGCAGGCTGGCTCAAGGTGGGGGAACTGATCATCAATCCTTTTGGAGAGGACGATGACGATTTTGAAACCAACCAACTAATTGACCGAAATATTCAGGTGTCCATGCTGGCTGTGGATGACATGCACCAGAACCTGCCCCCAACAGAGAAGGACAAGTTCTGGGTGGAGAGATACTTCTCTGTCCCCTACTCTACTGGTACTGAGACCCTCAGACCTACCTTCATGGGCTCAACATATGACATAAGCTTTGAATCTGGTCAGGCCGTCTCCATGCCCTTCGTCTATAAGGATGAGTGTGGTGATGTGGACAGGAAGATGAAGGATGTGTCtttagtgagagacagacagctgaAGGTGTCTCATCTTCAGACAGAACGAGGGGAGGGGCAGTTCAAGGTGGCTGTGGAACTCATCCAAGCCAATGACAATGAGCAGAGCTCTTGTTGAAAGATCTGTGCAACTCGTTTATgggttttgtttatttttggggGGATAATTCATGCATTTTCCATGCACCTGTGTGTCAATGATTGTGTGAAATGTCTTCTACAATCATGTTTAGATTGTTTGTTTGTAATCCTGGTTATTAAAAAATGATTTTGAAAAACATTAATTCTTATTTTTATGAAGAATATAAAAACCATTAAATTAAACAGCTGTGACAGTGATGCATGACTTTTAACTTTGAAGCCTGATTCCATGATATAACATTGTAGATTGATTTCAAGAACTAAATGAGATTATCTACATAAATGAATATACTGTAAATTGTGAACCAATCTGCCAAGACTGACATACGTATGTAAGGAATAAAGGTGTGATTCTTtttcatatttcatttttttgtattCTCTTGTATTGTTTATTTTCTGGTGTATTTTTTACGCAATGTGTTGTGTAATTTGTAAGATGCGGAGCTTTTTTGGTCTCAATAGGAcaccctgttaaaataaaggGCAAATAAAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU864478 lncRNA upstream 6266 89914970 ~ 89915169 (+) True G760491
TU863737 lncRNA upstream 9131 89911869 ~ 89912304 (+) True G759979
TU863728 lncRNA upstream 63695 89857459 ~ 89857740 (+) True G759970
TU863725 lncRNA upstream 66246 89854859 ~ 89855189 (+) True G759967
TU863706 lncRNA upstream 119702 89800542 ~ 89801733 (+) True G759954
TU864492 lncRNA downstream 17061 89949135 ~ 89949637 (+) True G760503
TU864502 lncRNA downstream 47516 89979590 ~ 89980502 (+) False G760511
TU864503 lncRNA downstream 47599 89979673 ~ 89980502 (+) True G760511
TU864505 lncRNA downstream 62400 89994474 ~ 89994710 (+) True G760513
TU864507 lncRNA downstream 65873 89997947 ~ 89998361 (+) True G760515
XM_036986748.1 mRNA upstream 9841 89861821 ~ 89911594 (+) False ndc1
XM_036986747.1 mRNA upstream 9841 89861822 ~ 89911594 (+) True ndc1
XM_021614336.2 mRNA upstream 67060 89853466 ~ 89854375 (+) True zgc:113691
XM_021614193.2 mRNA upstream 83645 89790910 ~ 89837790 (+) False yipf1
XM_036986749.1 mRNA downstream 134 89932208 ~ 89947643 (+) False hectd3
XM_036986750.1 mRNA downstream 134 89932208 ~ 89947643 (+) False hectd3
XM_036986751.1 mRNA downstream 134 89932208 ~ 89947643 (+) False hectd3
XM_036986752.1 mRNA downstream 134 89932208 ~ 89947643 (+) True hectd3
XM_021614196.2 mRNA downstream 19037 89951111 ~ 89957717 (+) True rps8a
TU863611 other upstream 224528 89696420 ~ 89696907 (+) True G759892
TU863518 other upstream 262088 89568003 ~ 89659347 (+) True LOC118965583
TU863314 other upstream 827041 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 827095 89080565 ~ 89094340 (+) False slc25a24l
TU863232 other upstream 1059607 88861279 ~ 88861828 (+) True G759598
TU864640 other downstream 228196 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 229240 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 442013 90374087 ~ 90389077 (+) False G760718
TU864805 other downstream 464848 90396922 ~ 90400472 (+) True G760718
TU864957 other downstream 768221 90700295 ~ 90709652 (+) True LOC110530875

Expression Profile