RNA id: XM_036986750.1


Basic Information

Item Value
RNA id XM_036986750.1
length 3647
RNA type mRNA
GC content 0.51
exon number 19
gene id hectd3
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89932208 ~ 89947643 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGTTGGCGTAAGCTAGCTTGCTAGGCTACTAGGTAGACGGAAGCCGACACGGTAACATAACTTGTCGTATTGAAAGCTAGCTGAAGTTATGGGCGGTTCGCCCTTTTTCAGATCCGATTAAGTGCTACCGGTGAGAGCTACGGAAAGTGTCTGCTAGCTGTCAGGTAGCTGAAAGCGGTGACACCGGATGAGAATGTTCCGTTTCGTTTGAAACGGGCTGGTGGATAAATCGCTTTGTGTTTTTTTGGTTTTGTTTGTTCAAATATAGAAGCTTTATCCACGAGAAAAATCCTGGGCAAACAAAGGGAGAAGTAAACGGAAAAACTGAAATGTCAGGTGACGTCCACCGTTGAAATGTGTGTTGACTGTGACGCatagttagctagttaactagccCTGCGACGGACTGGTGTGCCTGGCCAGCTTCAACTTCCTTAGCTTTAACTTACCtagcttttaaaaaaaacaacacacaaaGACATGTCACCGGGCGACAACCCTCACGTTTTACTAGGAAGGATTCGGTTTCTGAACAAATGCATAGATTGTTTCAGGAAGAGCGAAGCTGTGCCCGAGTGCCTATGTTTCGTCCCAAAAGAGGTTTGTTATAAAATCTGTAAAGATTCGTCATCCAATTCGACCGCTTCGTCTAGTACGTCCACCGCCAACTCATCCGTCGGTAAGACCCTGGTTTCAGTTTGGGAGAGCCCCCATCAAGCTCTCCACAGTAAGAAGCTATGCAAGTGCAACATCGAACCAAAGAAAGGGACATGTATTCGGACAACAGGGGAAGAGTATTGCAACAGCCACGGCCTGTGGGTTAAAATCAACAAGGATCAGTTGGAGGAGCACCGCTTGGGTCAGGAATGTGAGGAGGGCTGGGTCTTGGTCTGTAAACACACGGAGGGAGGAGATCGACTGGTACCTGTTGAATCACCTGAGACACTCGGCAGACACCAGCAGCTCTTTGGATATGACCACAAGCCctgtgacagATGGGAACAAGTGGTGGATGTAGAGAGTTCTCTTCACATCGGCTCTAAACCCAAGGTCGCGGAGCGTGATGAAGCAGCTGTTCAGAAGCTCAGATATGTTCCTCCCACCTGGACGTTTGAATATGATGAGGATCTGGTGCATTACTTCTACGACCACATCGGAAAGGAGGATGAGAACCTGGGCAGTGTCAAACAGTGTGTCACCAGCATTGAtgtgtcctcctgctcagaggaCCCTAGTGGTGGGGCAGGTTGCCTGACAGATGGAGATACGGAGACCTACTGGGAGAGTGATGGGATGCAGGGACAACACTGGATCAGACTGCACATGAAGAGAGGCACCGTAGTCAATAAGCTGATCTTGACGGTTGACTCAACCGATGACAACTACATGCCTAAAAGAGTGACTGTGTTCGGAGGGGAAGGAGACAATCTGAAGAAGCTCAGCGACGTCACCATAGACGACAATCTgattggtgaggtgtgtgtgctgGAAGACATGACGGCCCACCTGCCTGTCATTGAGGTTCGCATCGAGGAGTGCAGGGGTGAGAATGACGAGGGGATAGACGTTCGGATCAGAGGGCTGAAGATCAAGTCATCGTGTGAGAGAGACCTGGGGCTCAACGCTGACGTGTTTCAGTCTCCTAACCTAGTGCGTTATCCTCGACTGGAGGGTACACTACCTGATGTCCTCTACCGCAGGGCCCTGGTTATACAGAGGTTCATCTCGCTGCTGGACAGTCTCCTGCCCCACCTGGTTCCAGCCTGGGACTACAGCCTGGCCACCTTCAACCACATCAAGAGTATCAAGCCGTTCCTGCTGCTGTCCAAGCGTCGCTCGGCCCTGATCACCCAGTGTCTGAAGGACTCCGAGACCAGCAAGCCTAACTTTATGCCCCGGCTCTATATCAACCGTAGACTGGCCATGGAGCACAGAGACAACCCCTCACTGGACCCTACTGCTAAGAACGCTGTCTTCACACAGGTCTACGAGGGTCTGAAGCCATCCGATAAGTTTGAGAAGATTTTGGACTACAGaTGGCCGGCGCGTTACGACCAGTGGTGGGAGTGTAAATTCATAGCAGAGGGCATCATCGACCAAGGAGGGGGTTTTAGAGACAGTCTGGCAGACATGTCTGAAGAGCTGTGTCCCAGTTCAGCAGAATGCCTCCTGCCTTTACCCTTCTTCAACAGGACATCTAACCAGGGAACAGGCGAGGCCAGAGACCACTATGTTCCCAACCCGTCCTGCAGAGAGTTCCACAAGTTTGAGTGGATCGGACAGCTGATGGGAGCCGCTCTCCGAGGAAAAGACTTCCTGGTGCTGGCTCTGCCTGGTCTGGTGTGGAAACAGTTAACAGGGGAGGCTGTCTCCTGGAGCAAAGACTTCCCTGCTGTTGACTCTGTCCTGGTCAAGCTGCTGGAGGCCATGGAGGTCATGGACCAGGAGACATTTGACTTTAAATTTGGGGAGGAGTTGGTGTACACTACCCTGCTGAGTGACGGCAGACTGGTGGAGCTGCTACCAGGCGGCAGCAATCAGGTGGTACGCTACCAAGACCGCAGGGAGTTCATTCACCTGGTCCAGAAGGCACGCCTGGAGGAGAGCAGACACCAGGTCTGTGCTATGCAGGCGGGGCTGGTGAAGGTAGTGCCTCAGGCCGTGCTGGATCTGCTGACCTGGCAGGAGGTGGAGAAGAAGGTCTGTGGAGACCCGGAGATCACCGTGGAGGCACTCAAACGACTCActcGATATGAGGACTTGGAGCAGACTGATGTCAGGGTACAGTACCTGTGGGAAGCTCTCATGAACTTCACTAACGAGGACCGCAGCCGGTTCCTGAGGTTTGTGACGGGGAGGAGCCGTCTTCCTGCTCCCATCTACATCTTCCCTGACAAACAAGGCTCTGAGACTACAGATGCGTTGCCACAGTCCTCCACCTGCTCCAGTACCCTGTATCTACCCAACTACCCCAGTGCGAAAGTGTGTGAGGACAAGCTGCGCTATGCTGCCTATAACTGTGTTGCCATCGACACTGACATGAGTCCCTGGGAGGAGTGACCACGCCCCCTGCCACGCCCATATAGCAGTTTTATGCCACGCCCACCTGTATTTATGCAGCATTCATTACAAGTGGGGGGAAAACGCCAAAAATAGTACTTGTAAACTGGGAGCAACAAGTTGTGTGCATTCATGTGCTTTGAACTTACCGAGACCGCTGATTGGCTAATGTAATGAACGCAGCATTAGCATCACTATCTGAAGCTGCTGCCAAGCCTATTATCATTTATAAAATGGGTGGTTTGatctctgaatgctgattggttgaaagctgtggtatatccaaccgtataccatgggtatgacaaaacagatttttactgctctaattatgttggtaaccagtttataatagctatAAGGcaattctgggggggggggttgtgatatatggccaatatacttcAGTTAAGGGCTGTGTCCGAGCAGTCTTGTGTTGCGGCGTGTCTAAGAACAGCCCTAAGCTgtggaatattggccatataccacaccccccctcgggccttattgcttaagtataccgTATCTGCAACGGTGCCAACTATTTACAGCTGTACTGTACATAATAAACTAATGTGGAAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU864487 lncRNA upstream 7808 89923060 ~ 89924400 (+) True G760498
TU864478 lncRNA upstream 17039 89914970 ~ 89915169 (+) True G760491
TU863737 lncRNA upstream 19904 89911869 ~ 89912304 (+) True G759979
TU863728 lncRNA upstream 74468 89857459 ~ 89857740 (+) True G759970
TU863725 lncRNA upstream 77019 89854859 ~ 89855189 (+) True G759967
TU864492 lncRNA downstream 1492 89949135 ~ 89949637 (+) True G760503
TU864502 lncRNA downstream 31947 89979590 ~ 89980502 (+) False G760511
TU864503 lncRNA downstream 32030 89979673 ~ 89980502 (+) True G760511
TU864505 lncRNA downstream 46831 89994474 ~ 89994710 (+) True G760513
TU864507 lncRNA downstream 50304 89997947 ~ 89998361 (+) True G760515
XM_036986753.1 mRNA upstream 134 89917042 ~ 89932074 (+) False best4
XM_036986755.1 mRNA upstream 134 89918257 ~ 89932074 (+) False best4
XM_036986756.1 mRNA upstream 134 89921435 ~ 89932074 (+) True best4
XM_036986748.1 mRNA upstream 20614 89861821 ~ 89911594 (+) False ndc1
XM_021614196.2 mRNA downstream 3468 89951111 ~ 89957717 (+) True rps8a
XR_005053040.1 mRNA downstream 4589 89952232 ~ 89952338 (+) True LOC118965662
XR_005053039.1 mRNA downstream 4973 89952616 ~ 89952684 (+) True LOC118965661
XM_036986757.1 mRNA downstream 19866 89967509 ~ 89974264 (+) True acadm
XM_036986759.1 mRNA downstream 27889 89975532 ~ 89991005 (+) False rabggtb
TU863611 other upstream 235301 89696420 ~ 89696907 (+) True G759892
TU863518 other upstream 272861 89568003 ~ 89659347 (+) True LOC118965583
TU863314 other upstream 837814 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 837868 89080565 ~ 89094340 (+) False slc25a24l
TU863232 other upstream 1070380 88861279 ~ 88861828 (+) True G759598
TU864640 other downstream 212627 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 213671 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 426444 90374087 ~ 90389077 (+) False G760718
TU864805 other downstream 449279 90396922 ~ 90400472 (+) True G760718
TU864957 other downstream 752652 90700295 ~ 90709652 (+) True LOC110530875