RNA id: XR_005053039.1


Basic Information

Item Value
RNA id XR_005053039.1
length 69
RNA type mRNA
GC content 0.36
exon number 1
gene id LOC118965661
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89952616 ~ 89952684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCAATGACGATATTCATGTCCAGTTCTGCTACTGAATGTTTGTGACGATATTTGTGACTCTGAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU864492 lncRNA upstream 2979 89949135 ~ 89949637 (+) True G760503
TU864487 lncRNA upstream 28216 89923060 ~ 89924400 (+) True G760498
TU864478 lncRNA upstream 37447 89914970 ~ 89915169 (+) True G760491
TU863737 lncRNA upstream 40312 89911869 ~ 89912304 (+) True G759979
TU863728 lncRNA upstream 94876 89857459 ~ 89857740 (+) True G759970
TU864502 lncRNA downstream 26906 89979590 ~ 89980502 (+) False G760511
TU864503 lncRNA downstream 26989 89979673 ~ 89980502 (+) True G760511
TU864505 lncRNA downstream 41790 89994474 ~ 89994710 (+) True G760513
TU864507 lncRNA downstream 45263 89997947 ~ 89998361 (+) True G760515
TU864508 lncRNA downstream 45796 89998480 ~ 89998878 (+) True G760516
XR_005053040.1 mRNA upstream 278 89952232 ~ 89952338 (+) True LOC118965662
XM_036986749.1 mRNA upstream 4973 89932208 ~ 89947643 (+) False hectd3
XM_036986750.1 mRNA upstream 4973 89932208 ~ 89947643 (+) False hectd3
XM_036986751.1 mRNA upstream 4973 89932208 ~ 89947643 (+) False hectd3
XM_036986752.1 mRNA upstream 4973 89932208 ~ 89947643 (+) True hectd3
XM_036986757.1 mRNA downstream 14825 89967509 ~ 89974264 (+) True acadm
XM_036986759.1 mRNA downstream 22848 89975532 ~ 89991005 (+) False rabggtb
XM_036986760.1 mRNA downstream 23187 89975871 ~ 89991005 (+) False rabggtb
XM_036986758.1 mRNA downstream 23324 89976008 ~ 89991005 (+) False rabggtb
XM_036986761.1 mRNA downstream 23324 89976008 ~ 89991005 (+) True rabggtb
TU863611 other upstream 255709 89696420 ~ 89696907 (+) True G759892
TU863518 other upstream 293269 89568003 ~ 89659347 (+) True LOC118965583
TU863314 other upstream 858222 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 858276 89080565 ~ 89094340 (+) False slc25a24l
TU863232 other upstream 1090788 88861279 ~ 88861828 (+) True G759598
TU864640 other downstream 207586 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 208630 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 421403 90374087 ~ 90389077 (+) False G760718
TU864805 other downstream 444238 90396922 ~ 90400472 (+) True G760718
TU864957 other downstream 747611 90700295 ~ 90709652 (+) True LOC110530875

Expression Profile