RNA id: TU864708


Basic Information

Item Value
RNA id TU864708
length 2892
lncRNA type sense_over
GC content 0.42
exon number 2
gene id LOC110515626
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 90228661 ~ 90295350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcagtgtgttagtgatgtAAGGCGTGTCAGGACACCggtcagtgtgttagtgatgtAAGGCGTGTCAGGACACCGGTCAGTGTGTTAGTGACTATTGAAAACAATTCTGCAGTATCCATCATGATTTCCTGACTTTACGTATCTTCTGTCTGCTAATAATGCAAGCTGACAGCCATATAGATGTTTTGGGTTTTTTATACGCTCGATTTACTGAATTGTTTACTGAATGTATTATTGGAATGTTTTTATTGTTCAGGCAATGCTTTGGTAGGTGCAAATATCACGTTAGATGTTGCCTTTTTATTTCAACATGAAGTCGCACAGGGTTTAAATTATGTTTTGTAGACatttacatgtttatattatcaCACAAATCACACACACGTCTGCATGAATATGACTTAAAACTAAGGACCACTGAATCATGAATATAAAGATGGTCATCTAAATAGAAGGTCAGTGCAGGCTACTAAGGTAGGCTTGAAACCACGTGGATTTAGAATTAAAGGTACTACGCATGTATGTGTTTTATTTTCGAATTGTAATTTCACAAAATGTCCATAATATATCTGCACCAATAGTGGAATGATAGTGTTTAACAGGATTACTTAACCGatagtgttgtgattggctgtgatatacattttttttgtttttctaccACCAGAGAGGGAatctgttgtaaaaaaaaaaaaatgggaaagttgttttgactttgtggctgtgttatctagtaACATTCCACACAAGTAGGAATTTCCTGGTTGCAAATATTCAACACTGTTGGCTCAATTTCAATTTATGTGAGAAAATAAGTACTGAATAGTGaagggaatcattgtaccatctacatcacTGTGAACTATCTTTACAATAacaaaaaatttttttttttggaaGCTGGTGGATCAAAACCGAAAGTTAAAGGCTCAGGCGTCAGTCTCCATCATGTTACAGGGAAGTAGAATGCAGAGAAGGGGGAGATTTGTTTTGAATGCAACATAAAGCTGTTGCAGTTCCCCCACCTTCCACACGGGGGGAGACATTCAGAATGTAGCACCTTTTTAAGTTCTTCTTCTTATATTTGCATGAACAGACAAACCACTCATGTTGTCAGCTTTGGCTCAAGGATCACGCTACTCTAGCTATATTTAACATAACCTCACATGCTCTTCAAGGCTACTGCTATTGTCTGCTTGAGTGCTGCATTTAATCACCATCAAGTACTCAATACACTGTAGAGTGCATACCTTGTGTAACTACACGTAACAAAAAATAATAGTGCACTAGTTAACtatgtataatgtgtatatatactaaTCTACTTCCCACTCCATACTGGCCTGGtattgactacactatctagctaAGTACCTCTCCTTACTGGGCtaaactagctggctagctgaaCTTGGCTAGTTTTAGTCCTCATTGCCAAACATCATATATATACTGCACCCTCATTTCCTGTACACTTAACCCTTTTTTAAAGCGACTATTTGTTGATTAAATCAGAATTGATTAATACCAGGAATGAACAAGTTAATTTACGTACAAAAATAATCATTATAAAGCAACTGTACAGAGTGCCAATGGCTACAATGAATGGTTAAATGACTTTCAGGCACGAAGGATTAACAGAGCTCCTCCTCGCCTTCTCTATAGCGCTAGTGGTGACCGAGTCCATGATTTTTCGAGTCGACTCCTGGTATCAGAGTCGTTGGAGTCGACTCTCTCTCGACAATGCTCTAAACCAGGGGTATTCAAATCTTACCATACGAAGTCTGgcgcctgctggttttctgttcttcctgataattaattgcgcccacctggtgtcccaggtctaaatcagtccctgattaaaaAACGCAATGGAACGGGCTTCGGGGTCCAGAGTTGCGTTTGAGGGCTCTAAATAATGCTGTGTAACTGACTGTCTAGAATTCGAACAATATTCTACATTCTAAAAGTTGGCCCAACAGTCTAAATATATGGCTTTGAGACCGAGACAGTGTTAACCAGGTGGTATTGCATTACTATATTGATGGTGGTAGACAGCGGCGGCAGTAGGTGGCGGCGGCAGTAGGCGGCGGCAGTAGGCGGCGGCAGTAGGCGGCAGCGGCAGTAGGTAGAGGCAGTAGGCGGCGGCAGTAGGCGGCGGCGGCAGTAGGTAGAGGCAGTAGGCGGCAGCAGTAGGCGGCGGCGGCAGTAGGTAGAGGCAGTAGGCGGCGGCAGTAGGCGGCAGCAGTAGGCGGCGGCGGCAGTAGGTAGAGGCAGTAGGCGGCAGCAGCAGTAGGTAGAGGCAGTAGGCGGCGGCAGTAGGCGGCAGCAGTAGGCGGCGGCGGCAGTAGGTAGAGGCAGTAGGCGGCAGTAGGTAGAGGCAGTAGGCGGCGGCGGCAGTAGGTAGAGGCAGTAGGCGGCGGCAGGAGTAGGCAGCGGCAGTAGGCAGCGGCAGCAGTAGGCGGCAGGATACACTTTTTATAGCCACTTCCTGTTCTGTGGCACAATTCACCATTAATTACTTCTGTTGCTGGTTGACAATAGTGCTTTatttgatatgttgatatgtacAGTACTTTCTGTTAGAGGTTACTTATTTTCTCAGTTTATATTAAATATGATTTTATATTAGAGCTTTTGTTTACTGTTTGTTTTATAATAGTCATGTTTATTATTTTCTTACTTGTATTTAAAGTATGTGTTACTTTATTGTGTTACTGAGGGCAGCACAGTAGTGTATTTGATGTGAGAACAGTGCCTGAAGCTAATAGGAACTACTGTAAACCACTGCTTTAGCATTCTCTACTGCTGTGAAGGACCTTATAAAACCATGAGGGATTTATTGGTGTGGACTGTGAACATTAGTGCAATTAAAATCACTGTTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU864720 lncRNA upstream 122 90291784 ~ 90292236 (+) False LOC110515626
TU864722 lncRNA upstream 662 90291016 ~ 90291696 (+) False LOC110515626
TU864730 lncRNA upstream 18164 90273649 ~ 90274194 (+) True G760692
TU864719 lncRNA upstream 48552 90242398 ~ 90243806 (+) True G760681
TU864690 lncRNA upstream 64371 90227294 ~ 90227987 (+) True G760667
TU864759 lncRNA downstream 47864 90343210 ~ 90344064 (+) True G760715
TU864817 lncRNA downstream 67307 90362653 ~ 90400472 (+) False G760718
TU864839 lncRNA downstream 87386 90382732 ~ 90386980 (+) True G760734
TU864791 lncRNA downstream 94093 90389439 ~ 90400472 (+) False G760718
TU864797 lncRNA downstream 94093 90389439 ~ 90400472 (+) False G760718
XM_036986763.1 mRNA upstream 197741 90031024 ~ 90094617 (+) False st6galnac3
XM_036986764.1 mRNA upstream 197741 90031024 ~ 90094617 (+) False st6galnac3
XM_036986760.1 mRNA upstream 301353 89975871 ~ 89991005 (+) False rabggtb
XM_036986769.1 mRNA downstream 78725 90374071 ~ 90397178 (+) False LOC110530899
XM_036986770.1 mRNA downstream 78725 90374071 ~ 90397178 (+) False LOC110530899
XR_005053008.1 mRNA downstream 78725 90374071 ~ 90397563 (+) True LOC110530899
XR_005053009.1 mRNA downstream 103253 90398599 ~ 90400473 (+) True LOC118965588
XM_036986771.1 mRNA downstream 144454 90439800 ~ 90545258 (+) True LOC110517228
TU864640 other upstream 83399 90160270 ~ 90208959 (+) False G760623
TU864637 other upstream 83399 90161314 ~ 90208959 (+) True G760623
TU863611 other upstream 595451 89696420 ~ 89696907 (+) True G759892
TU863518 other upstream 633011 89568003 ~ 89659347 (+) True LOC118965583
TU863314 other upstream 1197964 89080565 ~ 89094394 (+) True slc25a24l
TU864778 other downstream 78741 90374087 ~ 90389077 (+) False G760718
TU864805 other downstream 101576 90396922 ~ 90400472 (+) True G760718
TU864957 other downstream 404949 90700295 ~ 90709652 (+) True LOC110530875
TU864974 other downstream 441945 90737291 ~ 90743084 (+) True ndufb3
TU864981 other downstream 474771 90770117 ~ 90771037 (+) True G760857

Expression Profile