RNA id: XM_036986769.1


Basic Information

Item Value
RNA id XM_036986769.1
length 1255
RNA type mRNA
GC content 0.58
exon number 8
gene id LOC110530899
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 90374071 ~ 90397563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCAGTGTTTGTGCTGCTGGCAGAATACTCGTCTGGTTCGTCTGTATCCACAACACGTTGGGAGTATGACACAGACAGTGCAGACGAATGGGGTGCAGCCCCTCAGTAAGACATGGGAACTCAGTCTGTATGAGCTACAGAGGACTCCACAGgAGGCCATCACAGATGGGCTGGAGATAGCGGTGTCTCCCAGGAGCCTCCACAGTGAGCTGATGTGTCCCATCTGTCTGGACATGCTGAAGAACACCATGACAACCAAGGAATGTCTGCACCGCTTCTGTGCCGACTGCATCATCACCGCCCTCCGATCAGGCAACAAGGAATGCCCTACGTGCAGGAAGAAGCTGGTGTCTAAGCGGTCCCTGCGGCCGGACCCTAACTTTGATGCCCTCATCAGTAAGATCTACCCCAGCAGAGATGAGTACGAGGCCCACCAGGAGAGGGTTCTGGCCCGCATCTCCaaacacaacaaccagcaggcCCTGTCCCACAGCATCGAGGAGGGCCTCAAGATACAGGCCATGAACAGGCTGCAGCGAGGGAAGAAGCACCAGCTGGAGAACGGGAGTGGGCTGGAGGACAACGGTGACTCCTCCCACTGCAGCAACGCCTCCGTCCACTCTAACCAGCAGGAGGCGGGGCCGAGCATCAAGCGCACCAAGACGTCAGATGACTCTGGTCTGGACATGGACAACGCTACAGAGAACGGAGGGGGAGGGGACGTGGCCATGGACGGAGCCAGCGAGATAGAACTGGTGTTCTGTCCTCATCCTACGCTCATGGACAAGGAGGACACCGTGCAGACCAGTGTTGAGTTTGTTCCCAGGTACATCAAGACGTCGGGTAACGCCACAGTGGACCACCTGTCTAAGTACCTGGCTGTGCGTCTGGCTCTGGAGGAACTGAGGAAGAACGGAGAGGCCAGCCCTGTCAATGTAGACGCTGCCTCAGAGAAACAATACACCATTTATATCCCTACAGCCAACGGCCAGTTCACGGTGCTGAACGGGTCTTTCTCTCTGGAGCTTGTCAGTGAGAAGTACTGGAAGGTGAACAAACCCATGGAGCTGTACTTCGCCCCCACCAAGGAGCACAAGTAGACCGCCTGGAGTACACCTGGGGGGGTAGACCGCCTGGAGTACACCTGGAGCACACCTGGGGGGTAGACCACCTGGAGTACACCTGGGGGGTAGACCACCTGGAGTACACCTGGAGCACACCTGGGGGGGTAGACCACCTGGAGCACACCTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU864759 lncRNA upstream 30007 90343210 ~ 90344064 (+) True G760715
TU864697 lncRNA upstream 78725 90292358 ~ 90295346 (+) False LOC110515626
TU864705 lncRNA upstream 78725 90292358 ~ 90295346 (+) False LOC110515626
TU864708 lncRNA upstream 78725 90292358 ~ 90295346 (+) False LOC110515626
TU864700 lncRNA upstream 78725 90292395 ~ 90295346 (+) False LOC110515626
TU864849 lncRNA downstream 22208 90419386 ~ 90420839 (+) True G760742
TU864853 lncRNA downstream 22381 90419559 ~ 90420283 (+) True G760743
TU864887 lncRNA downstream 102867 90500045 ~ 90502213 (+) True G760773
TU864902 lncRNA downstream 142926 90540104 ~ 90541147 (+) True G760788
TU864909 lncRNA downstream 165489 90562667 ~ 90562894 (+) True G760794
XM_036986765.1 mRNA upstream 78721 90228661 ~ 90295350 (+) False LOC110515626
XM_036986766.1 mRNA upstream 78721 90228661 ~ 90295350 (+) False LOC110515626
XM_036986767.1 mRNA upstream 78721 90228661 ~ 90295350 (+) False LOC110515626
XM_036986763.1 mRNA upstream 279454 90031024 ~ 90094617 (+) False st6galnac3
XM_036986764.1 mRNA upstream 279454 90031024 ~ 90094617 (+) False st6galnac3
XR_005053009.1 mRNA downstream 1421 90398599 ~ 90400473 (+) True LOC118965588
XM_036986771.1 mRNA downstream 42622 90439800 ~ 90545258 (+) True LOC110517228
XM_036986776.1 mRNA downstream 194812 90591990 ~ 90646224 (+) False LOC110531056
XM_036986775.1 mRNA downstream 194825 90592003 ~ 90650861 (+) False LOC110531056
XM_036986772.1 mRNA downstream 194826 90592004 ~ 90652705 (+) False LOC110531056
TU864640 other upstream 165112 90160270 ~ 90208959 (+) False G760623
TU864637 other upstream 165112 90161314 ~ 90208959 (+) True G760623
TU863611 other upstream 677164 89696420 ~ 89696907 (+) True G759892
TU863518 other upstream 714724 89568003 ~ 89659347 (+) True LOC118965583
TU863314 other upstream 1279677 89080565 ~ 89094394 (+) True slc25a24l
TU864957 other downstream 303117 90700295 ~ 90709652 (+) True LOC110530875
TU864974 other downstream 340113 90737291 ~ 90743084 (+) True ndufb3
TU864981 other downstream 372939 90770117 ~ 90771037 (+) True G760857
TU865491 other downstream 555814 90952992 ~ 90955079 (+) False G761244
TU865499 other downstream 555814 90952992 ~ 90955079 (+) False G761244

Expression Profile