Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_005053008.1 |
| length | 1575 |
| RNA type | mRNA |
| GC content | 0.56 |
| exon number | 9 |
| gene id | LOC110530899 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 90374071 ~ 90397563 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0036353 | histone H2A-K119 monoubiquitination | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0009948 | anterior/posterior axis specification | biological_process |
| GO:0033339 | pectoral fin development | biological_process |
| GO:0060042 | retina morphogenesis in camera-type eye | biological_process |
| GO:1902254 | negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator | biological_process |
| GO:0000278 | mitotic cell cycle | biological_process |
| GO:0071339 | MLL1 complex | cellular_component |
| GO:0035102 | PRC1 complex | cellular_component |
| GO:0016604 | nuclear body | cellular_component |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0016874 | ligase activity | molecular_function |
| id | description |
|---|---|
| K10695 | RNF1_2; E3 ubiquitin-protein ligase RNF1/2 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU864759 | lncRNA | upstream | 30007 | 90343210 ~ 90344064 (+) | True | G760715 |
| TU864702 | lncRNA | upstream | 78725 | 90293230 ~ 90295346 (+) | False | LOC110515626 |
| TU864849 | lncRNA | downstream | 21823 | 90419386 ~ 90420839 (+) | True | G760742 |
| TU864853 | lncRNA | downstream | 21996 | 90419559 ~ 90420283 (+) | True | G760743 |
| TU864887 | lncRNA | downstream | 102482 | 90500045 ~ 90502213 (+) | True | G760773 |
| TU864902 | lncRNA | downstream | 142541 | 90540104 ~ 90541147 (+) | True | G760788 |
| TU864909 | lncRNA | downstream | 165104 | 90562667 ~ 90562894 (+) | True | G760794 |
| XM_036986765.1 | mRNA | upstream | 78721 | 90228661 ~ 90295350 (+) | False | LOC110515626 |
| XM_036986766.1 | mRNA | upstream | 78721 | 90228661 ~ 90295350 (+) | False | LOC110515626 |
| XM_036986767.1 | mRNA | upstream | 78721 | 90228661 ~ 90295350 (+) | False | LOC110515626 |
| XM_036986763.1 | mRNA | upstream | 279454 | 90031024 ~ 90094617 (+) | False | st6galnac3 |
| XR_005053009.1 | mRNA | downstream | 1036 | 90398599 ~ 90400473 (+) | True | LOC118965588 |
| XM_036986771.1 | mRNA | downstream | 42237 | 90439800 ~ 90545258 (+) | True | LOC110517228 |
| XM_036986776.1 | mRNA | downstream | 194427 | 90591990 ~ 90646224 (+) | False | LOC110531056 |
| XM_036986775.1 | mRNA | downstream | 194440 | 90592003 ~ 90650861 (+) | False | LOC110531056 |
| XM_036986772.1 | mRNA | downstream | 194441 | 90592004 ~ 90652705 (+) | False | LOC110531056 |
| TU864640 | other | upstream | 165112 | 90160270 ~ 90208959 (+) | False | G760623 |
| TU864637 | other | upstream | 165112 | 90161314 ~ 90208959 (+) | True | G760623 |
| TU863611 | other | upstream | 677164 | 89696420 ~ 89696907 (+) | True | G759892 |
| TU863518 | other | upstream | 714724 | 89568003 ~ 89659347 (+) | True | LOC118965583 |
| TU863314 | other | upstream | 1279677 | 89080565 ~ 89094394 (+) | True | slc25a24l |
| TU864957 | other | downstream | 302732 | 90700295 ~ 90709652 (+) | True | LOC110530875 |
| TU864974 | other | downstream | 339728 | 90737291 ~ 90743084 (+) | True | ndufb3 |
| TU864981 | other | downstream | 372554 | 90770117 ~ 90771037 (+) | True | G760857 |
| TU865491 | other | downstream | 555429 | 90952992 ~ 90955079 (+) | False | G761244 |
| TU865499 | other | downstream | 555429 | 90952992 ~ 90955079 (+) | False | G761244 |
