RNA id: XM_036986772.1


Basic Information

Item Value
RNA id XM_036986772.1
length 4194
RNA type mRNA
GC content 0.54
exon number 28
gene id LOC110531056
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 90591990 ~ 90652705 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCCACGCGGACGCAGGCAGTAGACCGGGAGGAGGGATCAGTACAGCTCGAGCTCAAGGAGACGAACGGTAGAGCGAGCGCCTCTTCTTCTGAAGGACGACCGGACCTCGCGCGTATCCAGAACTTTATTATTTtattcctctcttttcctcctcctttcctcccgtTTTCTTTCCCACGCGATGAGTGATTGACCCAGAGAGGGTCCTACGCGCTGTTCTTCTAaagttctgggtcaggtcagttagaaggagaggatgatgaTGAGGTCCGAGGTCATCGCGCTGTGCTTCCTGTTCGGATCTGCGGCACATGCACAGGCCGTCCCAGAATGCAACAaGAAACATGAGTGTCCTATAGATGTGTACTTTACAATCGACACATCTGAGACCATCGCCCTGCAAGAACCTCCCCCTGGATCACTGGTGGAGAGCATTAAGATGTTTACAGAGCGTTTTGCAGAGCGTCTGGAGGATGCTGACTATAAAGGTCTGGTCCAGATCAGATGGCAGTTAGGAGGACTACACTTCTCCCAGAGACAACAGGTCTTCAGCCGTATACAGGCCAAGGACGCCTTCATCCAGgGTTTGAGGAATATCCGGTACCTGGGTAAGGGAACCTACATCGACTGCGCCCTCGCTAACATGACACAGGAAATGACACGTTTGCCCTCTAACCCCGGAGCGCTGCGATTCGCTGTCGTCATTACCGACGGTCACGTGACAGGAAACCCGTGCGGCGGGGTGAAGGTGACGGCCGAGCGTGCGCGCGACGAGGGCATCAGAATGTTTGTGGTCGCGGCCACGAAGAACGTGGACGAGACGGGTCTGAGGGAGATCGCTAACTCTCCGGCCAACGTCTACAGAAAAGACTTCCTGGCTGTCGACCTCAGTGGCAACAGGCCTGTTATACAGCTGGACACTATAGACCGGATCATCAAGAccatgACCCATCTGGCCTATCAGGAGTGCTACAAGGTGAAGTGTCTGGAGACAGATGGACCCCCTGGACCTGAAGGACACAGAGGACAAAAGGGAGCTAAAGGAGACAACGGCAACCCCGGTCCTAAAGGCGATAGGGGAAGACAGGGCGACCCTGGCATCGAGGGTCCCATCGGTCACCCAGGAGTCAAGGGTGAAATAGGTATCAAAGGTGAAAAGGGGGAGATCGGAGCTGAGGGGAAGAAGGGTGTGGCCGGCCTCGCTGGACGCAACGGGACAGATGGACAGAAGGGGAAGATCGGGCGCATCGGCGCTCCCGGCTGCAAAGGAGATCCAGGAGACAGGGGTCCTGATGGTCACCCAGGAGACGCGGGCGACGGTGGTCTTCCTGGAACGGATGGAGAGAAGGGAGATCCCGGTCGCTCAGGAAGAGCAGGCCCCCTCGGCCCGGTGGGAGACTCTGGACCTAAGggtgagagagggagtgctggCACACCTGGCTTCCCAGGAAACAAAGGAACGCCAggaACCGCTGGAGGCCCGGGAGTCAATGGAGAACTGgggagaagaggagacttTGGGCCAATGGGGACCCCGGGAACAGACGGAGTTAAAGGAGACAAGggcgaGGCAGGACCTGAGGGGCTGAGAGGACTACCAGGTGAAGTAGGAAACAAAGGAACCAAGGGAGACAACGGACTCCCAGGGCCACGCGGGCTCCCCGGAACTTCAGGAGCGGCAGGGAAGAACGGTACCCGTGGCGACCCTGGTGATGCTGGACCCAGAGGAGACCCCGGCCTTCCAGGACTAAAGGGTGACGTTGGAAGAGCTGGCTTCAGTTACCCAGGACCAAGAGGACCaacgGGAGATCGCGGGGAGAAGGGCGGCCCAGGGcccagaggaggcagaggagactGTGGCCCCAAGGGAGGACCAGGGGGAAAGGGAAcctctggagaggagggagaaccagggcCTCAGGGAGAACCTGGATTCAGAGGACCAAGAGGAGTGGGTGGACGAGATGGAGATCCAGGTCCCGAGGGAGACCCCGGCCTCACAGAATGTGATGTCATGAACTACATCAGAGAGACCTGCGGCTGCTGTGACTGTGAGAAGCGGTGTGGGGCGCTGGACATCGTGTTTGTGATTGACAGCTCAGAGTCAGTGGGTCTCGCCAACTTCACTCTGGAGAAGAACTTTGTGATCAACACCATCAACAGACTGGGATCCATGGCCAAGGACCCCAACTCAGAGACAGGTACCAGAGTGGGGGTGGTCCAGTACAGTCACAGTGGAACCTTCCAGGCCATCAGGCTCAATGACTCCAAGATCGACTCACTGTCTGCCTTCAAGgatgCGGTGAAGCGTCTGGAGTGGATAGCCGGGGGGACCTGGACCCCATCAGCGCTGAAATACGCCTACGACCACCTGATCAAAGACAGTCGCAGAGCTAAAGCCAACGTCACCGTGGTGGTCATCACAGACGGACGGTTCGACCCCAGGGACGACGACTCACTGCTCACATACCTCTGCAGcgaCCCCAGTGTGGACGTGAGCGCTATAGGTATAGGGGACATGTTTGACCAGATAGAGGAGAATGAGAGCCTGAAGAGTATAGCCTGTCAGAGAGACGGTAGGGTGCTGGGGATGAGGCGCTTCGCTGATCTGGTGGCAGAGGAGTTCATCGACAAGATAGAGACCGTGCTctgcccagATCCTGTCATCGTGTGTCCTGACCTCCCCTGTAAAACTGagccaGCGGTGGCCAGCTGTGCCCAGCGCCCTGTGGACCTTGTGTTCATGCTGGACGGGTCAGAGAGGATGGGAGTGGAGAACCACCGCCGAGCCAAGGAGTTCATTGAGAACGTGGCGCGCCGCCTCACGCTGGCCAACGGCCAATCAGACGACAGGAACGCCCGCATCGCCCTGCTGCAGTACGGCAGCAAATCAGAACAGAAGGTTGAGTTTTCGCTCACGCACAATCTGACGGTGATCGCTGATTCGCTGGCTGGGATGAGCTACATGGACTCCGCCTCCTCTCTGGGCAGCGCCATCATACACGCTGTCAACAACCTGGTGATGTCACAGGGCAGCCGTCTGGCGCGTCGTAACGCAGAACTGTCTTTTGTCTTCATTACCGACGGAATCACTGCCAGCGAAAGCCTGGAGGAGGGCGTGTCGGCCATGCGGCGGGCTGAGGGTGTTCCCACGGTGATCGCCATGGGGACCGACACGGACCAGGACGTGCTGAGGAAGGTTGCCCTGGGAGACACGTCAGCCATCTTTAGAGGAGAGGACTACGCCACGCTGGGGAAACCCACATTCCTAGAACGCTTCATCCGCTGGGTCTGCTAACCAGCTCATTAGAGCTAACCAGCTAACGAGCTCGTTAGAGCTAACCAGCTGTGTTTTAACTAACAGTTAAAGGTGCAATCCGTAAGAATCTTTTTAGTAacgaaataaacaaacaaatcaatGTGTTCTCAGATGTGAAGGTGCTCTGTGCTTTGCAAAGTTTAAGCAAAAAGTGACAGAACTTGGAAGCTCAACTTCTAGCTCGTCCAAGAGACACAAGGCACTCCAGATTTTTTTATCTTTTAAATTAATTAAATGACAGATTTCACCTTTAACTAGCTAAGCCCAAACAACCAAAGCCTTTCTCATCAGAGAGTTACTGATACTGAAGTGTGAAAGAGGTTTGTAAGTCTTGTTTCTGTTAGTTTTTTTGTATTGTGTTTCTAGAAGAGATCCCTCACTGTGAGGTCTGTATCAGTACGTTTGTATTTTACACTAAAGGTGCTATTCTAGTGGAAGGAGTTACACACAGTCTCGTGTTGCACAAACAGTCAACTCTGTTTATCAAACAGTCTTAATTTTTAAACAGTTCAGTTTTTCAAACTTTGTAATTTCAATAGAAGTGCCGCTTTATACTTTATTATTCTAGTTCAGGGGACCATCCACTCATTTAGACACATCTCTCACacacatctctcacacacacacatctctcacacacaaacacaccaattAGTTCAGGGTTTCAAACTCGGTCCTGTCCTCCTGCTGAGCTAGCTACTCTGAGCTAGCTACTAAACCCAACACCCCTACATCTATACCCAACACACCCACACTtttacccaacacacacacacacacacacacacacacacacacacacacacacacactgaaaatgCATTTGTTGTAAACTGAGCAGTATGTAATAAAGCTAGCTGTGGTGAAAccaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU864920 lncRNA upstream 6352 90585116 ~ 90585652 (+) True G760802
TU864909 lncRNA upstream 29110 90562667 ~ 90562894 (+) True G760794
TU864902 lncRNA upstream 50857 90540104 ~ 90541147 (+) True G760788
TU864887 lncRNA upstream 89791 90500045 ~ 90502213 (+) True G760773
TU864853 lncRNA upstream 171721 90419559 ~ 90420283 (+) True G760743
TU864955 lncRNA downstream 5102 90657807 ~ 90658118 (+) True G760832
TU864960 lncRNA downstream 8526 90661231 ~ 90661513 (+) True G760837
TU864967 lncRNA downstream 39720 90692425 ~ 90693044 (+) True G760844
TU864996 lncRNA downstream 75824 90728529 ~ 90729541 (+) True G760871
TU864997 lncRNA downstream 78285 90730990 ~ 90732388 (+) True G760872
XM_036986771.1 mRNA upstream 46746 90439800 ~ 90545258 (+) True LOC110517228
XR_005053009.1 mRNA upstream 191531 90398599 ~ 90400473 (+) True LOC118965588
XR_005053008.1 mRNA upstream 194441 90374071 ~ 90397563 (+) True LOC110530899
XM_036986769.1 mRNA upstream 194826 90374071 ~ 90397178 (+) False LOC110530899
XM_036986780.1 mRNA downstream 5606 90658311 ~ 90674864 (+) False zgc:162816
XM_036986778.1 mRNA downstream 5608 90658313 ~ 90674864 (+) False zgc:162816
XM_036986779.1 mRNA downstream 5608 90658313 ~ 90674864 (+) False zgc:162816
XM_036986777.1 mRNA downstream 5610 90658315 ~ 90674864 (+) True zgc:162816
XM_021614166.2 mRNA downstream 47483 90700188 ~ 90709778 (+) False LOC110530875
TU864805 other upstream 191532 90396922 ~ 90400472 (+) True G760718
TU864778 other upstream 202927 90374087 ~ 90389077 (+) False G760718
TU864640 other upstream 383045 90160270 ~ 90208959 (+) False G760623
TU864637 other upstream 383045 90161314 ~ 90208959 (+) True G760623
TU863611 other upstream 895097 89696420 ~ 89696907 (+) True G759892
TU864957 other downstream 47590 90700295 ~ 90709652 (+) True LOC110530875
TU864974 other downstream 84586 90737291 ~ 90743084 (+) True ndufb3
TU864981 other downstream 117412 90770117 ~ 90771037 (+) True G760857
TU865491 other downstream 300287 90952992 ~ 90955079 (+) False G761244
TU865499 other downstream 300287 90952992 ~ 90955079 (+) False G761244

Expression Profile