RNA id: TU864957


Basic Information

Item Value
RNA id TU864957
length 407
RNA type TUCP
GC content 0.52
exon number 4
gene id LOC110530875
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 90700188 ~ 90709778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGCTTCCTTTTTGGACCTACGTCTCCAGAACTACAATGGCCAAGCGCACCAAGAAGGTGGGGATTGTGGGTAAATACGGCACGCGTTACGGCGCGTCGCTCAGGAAGATGGTGAAAAAGATTGAGATCAGCCAGCACGCCAAGTACACCTGCTCCTTCTGTGGCAAGACTAAGATGAAGAGGAGGGCAGTTGGTATCTGGCACTGTGGATCCTGCATGAAGACTGTTGCTGGAGGCGCCTGGACATACAACACGACGTCTGCAGTCACCGTGAAGTCGgccatcaggagactgaaggagCTGAAAGACCAGTAGACTGTTACCGGAGAATCAAGACTGTCACTTTTTTGCACAGTTTGACCTGGACGCTGTGGCGAACATCTACCACAATAAAAAGCAGTCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU864967 lncRNA upstream 7251 90692425 ~ 90693044 (+) True G760844
TU864960 lncRNA upstream 38782 90661231 ~ 90661513 (+) True G760837
TU864955 lncRNA upstream 42177 90657807 ~ 90658118 (+) True G760832
TU864939 lncRNA upstream 100511 90599041 ~ 90599784 (+) True G760817
TU864920 lncRNA upstream 114643 90585116 ~ 90585652 (+) True G760802
TU864996 lncRNA downstream 18877 90728529 ~ 90729541 (+) True G760871
TU864997 lncRNA downstream 21338 90730990 ~ 90732388 (+) True G760872
TU865014 lncRNA downstream 95488 90805140 ~ 90805628 (+) True G760886
TU865015 lncRNA downstream 95978 90805630 ~ 90862789 (+) True G760887
TU865020 lncRNA downstream 109023 90818675 ~ 90824470 (+) True G760892
XM_036986780.1 mRNA upstream 25431 90658311 ~ 90674864 (+) False zgc:162816
XM_036986778.1 mRNA upstream 25431 90658313 ~ 90674864 (+) False zgc:162816
XM_036986779.1 mRNA upstream 25431 90658313 ~ 90674864 (+) False zgc:162816
XM_036986777.1 mRNA upstream 25431 90658315 ~ 90674864 (+) True zgc:162816
XM_036986772.1 mRNA upstream 47590 90592004 ~ 90652705 (+) False LOC110531056
XM_036986785.1 mRNA downstream 11495 90721147 ~ 90736113 (+) False pecr
XM_036986784.1 mRNA downstream 11502 90721154 ~ 90728081 (+) True pecr
XM_036986786.1 mRNA downstream 27579 90737231 ~ 90743084 (+) False ndufb3
XR_005053010.1 mRNA downstream 69471 90779123 ~ 90785701 (+) False LOC110530867
XM_021614155.2 mRNA downstream 69600 90779252 ~ 90796938 (+) True LOC110530867
TU864805 other upstream 299823 90396922 ~ 90400472 (+) True G760718
TU864778 other upstream 311218 90374087 ~ 90389077 (+) False G760718
TU864640 other upstream 491336 90160270 ~ 90208959 (+) False G760623
TU864637 other upstream 491336 90161314 ~ 90208959 (+) True G760623
TU863611 other upstream 1003388 89696420 ~ 89696907 (+) True G759892
TU864974 other downstream 27639 90737291 ~ 90743084 (+) True ndufb3
TU864981 other downstream 60465 90770117 ~ 90771037 (+) True G760857
TU865491 other downstream 243340 90952992 ~ 90955079 (+) False G761244
TU865499 other downstream 243340 90952992 ~ 90955079 (+) False G761244
TU865506 other downstream 243340 90952992 ~ 90955079 (+) False G761244

Expression Profile