RNA id: XM_021614155.2


Basic Information

Item Value
RNA id XM_021614155.2
length 2614
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110530867
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 90779123 ~ 90796938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagaggaaagtttTTAGCAAACAACAAAACAAGTCTTTCAAGTAGCTCGCTGTTTGTAGAAAATTTGATTTAGGTTTAGCCATTGGTTTTCGTTCTACATGGGACTGTGAAATTCGTAGAGTTTATCTGCTACATAACTCACCGTTGAcagatagctagctagcctaaTAACATAGATGGTAAAAACACAGAACTAGATACAGCAGAGATGGTATCAATCAACCCAGTGGACTCTGATCCGGTACTCGGGATCAACGTTGTGGTGAAGGATGAAGACGGAGAGGTAGTGGATTATTTAGCTGAACCAAGGCTGTCCTGGTGTGTGAAAGAGGAACAAGAAGAGGTACCGTGTCACCTAGAAGAACACGGTGGCTGTATAGACCAGGCTATAGATCCTTCAGAATCACTCCAGAAGAATCAGCGGAGTCACACCACTGAAACCAACTACCCTTGCTTAGCCTGTGGGAAGTATTTCTACAACTCATCAACCCTGCGGAGACACATGCGTACTCACACAGGTGAGAGGCCGTATCACTGCTCTGAGTGTGGGCGGAGCTTCAGTCACTCTGGCAACCTGAGGAGTCATCAGGtgatccacacaggagagagaccgtACCACTGTCTGGTCTGTGGCAAGAGCTTCAGTCAGCCAGGAGGCCTGGCCaagcaccagagaacacacacaggagagaagccattcCACTGCACTTTCACAGAGTGCGGCAAGAGTTTCTCCAAGTTAGAACACCTACAGATACACCACaggactcacacaggagagaagccttacccctGCTCTGCCTCTGACTGTGGAAGGAGATTCTCCAACTCAGGCCAGCTGATCCAACACATGCGTACTCATACAGGAGAGAGGCCGTACCACTGCTCAGAGTGTCTGAAGACCTTCTCCCACCCAGGAGCTCTAAAGGACCACCAGAGGATTCACTCAGGAGAGAGACCCTACGTCTGTGCTGTCTCGGCCTGCGGTAAGATGTTTATAAACTCTGGGGCTCTGAAAAAGCACAGCCAGACCCACACAGGGGAAAAacctcactgctgctctgactgtgggagagGCTTCTCCCAGCTGGCTCACCTCCAGGCTCATCAGAGGACTCACACAGGGGAAAGACCCTATCATTGCTCCCTCTGTTGGAAGAGCTTTATCCAACAAGGGCATCTGGACAGGCATAGACGCATCCACCTAGCAGCGGACACACCTGGAGATCAGTTATCCCCTAGCATCAGTCCAGATCAGCACATCAGACCGATAGATGATTCACCTGAGGTCTTTGATGAAGAGACTCTACCAGAACAACATGTACATCCTGAATTAATGAGTGACCTTGAATGACTGGTTTGATTGCATAATTCCAGACTGTGTCAATTTTTACACTGTTTTTGCTTGTATCTCACTGCTGCATAAAACCATTGGTGTTATTATTCTGTCAAATATCCTGCAATACAttatgtggatggatggattggatGATTGAATGGATGGAttggaatggatggatggatggatggatggatggatggattggaaTGGATAGATGGAAGAATGGATACTTCAGCTAAACACAACATTTACACACTTTAGTGTTTTCCCTCTCAGTGAATGTTGAACGTTTCATCACAGTCTAGTTGATAACAGCACGACTGGATGTGTTGAACATGTACATGCTCTCATGAAACATGAGTCAAATCAGTTGTTCTACTCTCAACCTTTGTTTAAAACATGGATTTAAAATGAGATAATATAATACATTGAGTTAAATAGTATTTCAATTACTATTATGAGTGAAAATTATGAGGGAAAGATGTGATGCAAGAGGCCTCTAATAAGGATGTGATGCAAGAGGCTTCTAATAATGATGTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCCTCTAATAAGGATGTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCCTCTAATAAGGATGTGATGCAAGAGGCTTCTAATAATGATGTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCTTCTAATAATGATGTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCTTCTAATGATGATATGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCTTCTAATATGGATGTGATGCAAGAGGCTTCTAATAATGATGTGATGCAAGAGGCTTCTAATAATGATGTGATGCAAGAGGCTTCTAATAATTATGTGATGCAAGAGGCTTCTAATAAGGATTTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCATCTAATATGGATGTGATGCAAGAGGCTTCTAATAATGATGTGATGCAAGAGGCTTCTAATAATGATGTACAGTAAAATGATgtaaaaatacttttttgacatttttacaagtgTATTAAAAATTACAAATGGAAATATTACATCAACATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU864997 lncRNA upstream 46864 90730990 ~ 90732388 (+) True G760872
TU864996 lncRNA upstream 49711 90728529 ~ 90729541 (+) True G760871
TU864967 lncRNA upstream 86208 90692425 ~ 90693044 (+) True G760844
TU864960 lncRNA upstream 117739 90661231 ~ 90661513 (+) True G760837
TU864955 lncRNA upstream 121134 90657807 ~ 90658118 (+) True G760832
TU865014 lncRNA downstream 8202 90805140 ~ 90805628 (+) True G760886
TU865015 lncRNA downstream 8692 90805630 ~ 90862789 (+) True G760887
TU865020 lncRNA downstream 21737 90818675 ~ 90824470 (+) True G760892
TU865022 lncRNA downstream 34003 90830941 ~ 90831758 (+) True G760894
TU865455 lncRNA downstream 81357 90878295 ~ 90878639 (+) True G761221
XM_036986786.1 mRNA upstream 36168 90737231 ~ 90743084 (+) False ndufb3
XM_036986785.1 mRNA upstream 43139 90721147 ~ 90736113 (+) False pecr
XM_036986784.1 mRNA upstream 51171 90721154 ~ 90728081 (+) True pecr
XM_021614166.2 mRNA upstream 69474 90700188 ~ 90709778 (+) False LOC110530875
XM_036986777.1 mRNA upstream 104388 90658315 ~ 90674864 (+) True zgc:162816
XM_036986791.1 mRNA downstream 3050 90799988 ~ 90830525 (+) True LOC110530865
XM_036986792.1 mRNA downstream 116835 90913773 ~ 90916737 (+) True LOC110530903
XM_036986799.1 mRNA downstream 442948 91239886 ~ 91260968 (+) True rgs20
TU864981 other upstream 8215 90770117 ~ 90771037 (+) True G760857
TU864974 other upstream 36168 90737291 ~ 90743084 (+) True ndufb3
TU864957 other upstream 69600 90700295 ~ 90709652 (+) True LOC110530875
TU864805 other upstream 378780 90396922 ~ 90400472 (+) True G760718
TU864778 other upstream 390175 90374087 ~ 90389077 (+) False G760718
TU865491 other downstream 156054 90952992 ~ 90955079 (+) False G761244
TU865499 other downstream 156054 90952992 ~ 90955079 (+) False G761244
TU865506 other downstream 156054 90952992 ~ 90955079 (+) False G761244
TU865509 other downstream 156054 90952992 ~ 90955079 (+) False G761244
TU865515 other downstream 156054 90952992 ~ 90955139 (+) False G761244

Expression Profile