RNA id: XM_036986792.1


Basic Information

Item Value
RNA id XM_036986792.1
length 2657
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC110530903
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 90913773 ~ 90916737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagagagagagagagagagagaggaggggggagagaacgaCACCAGTAAAGGAATGATTCTGTCATTTTGTttgcaagagaagagagaggagagaagagaggagagaagagaggagagaagagaggagagaagagaggagagaaggtggcacagaacagagagaagggagatacTAGAGAACATGCACACCGCCCGCTGACATACATTCAGGAATCATGTTGACTCTACCGTATGAAGAACCAGATATGACGTATGAGCCCCGGTTTGGAGTCAACTACCCCCGTGGGAGCTTACCGGATCTGGAGCCAAACCCGATACACAGCCTGAACGTCACGTCGAAcccggagagagagggtgaggaggagccAGACCCGATACACAGCCTGGACATCACGTCgaacctggagagagagggcgaggaggAGCCAGACCCGATACACAGCCTGGAACTCAGGTCGAAcccggagagagagggtgaggaggagccAGACCCGATACACAGCCTGAACGTCACGTCGAACccggagagagagggcgaggaggAGCCAGACCCGATACACAGCCTGGACATCACGTCGGACCCAGAGGAGGGTGACATCTCAGAaagagaggatgaggaagaagagagagaggatgacatcCAGCAGGATGAAAACGGACACCCCAGAAAGAGAGGACCACGGAGAAAGAAGTTGACAAAAGGTAGACAGGAGAGGGTCACGGTGCGCCGTCATGAGGCAAACGCCCGTGAGCGCAGCAGGATGCACGGTCTGAACGACGCGTTAGAGAGCCTCCGAAAGGTGGTGCCCTGCTACTCCAAGACCCAGAAGCTCTCCAAGATAGAGACTCTGCGCCTGGCTAAGAACTACATCTGGGCCCTGTCAGAGACGCTGTCTGCGGGCAAGAAGCCGGACCTGCTGGGGTTCGTTCAAACTCTGTGTAAGGGCCTGTCCCAGCCCACGACCAACCTGGTGGCTGGCTGTCTGCAGTTGAAAGCCAGGTCCTTCCTCACGGACCACAACGGAGAGGTGACGTACCCCGGTAGTACGGCCCACTATGACAACATGTATCCCTACCCCGGGGCAGATCTGGGCACGGCCCCTGGACAAGCCTGCAGCACCCTGGGCAGCGCCAAGCCGTCCTACCACAGCCGGCACTACAGCTACGGTGGCCAGTACGAGCCGTGCTACGACCACACGCCTcctgagggaggaagggagggacacCTAGGCGGACAGATCAGCCCTCCTCTGAACTTTAACGGCATATTCTCTCTGAAACACGACGAACCGGAGGAGTACGGGAAGAGCGGCCACTATGGGATGAGATACAGTTCTGTGCCCGGTCACGGCTCCCTCAGCTCGGCATCCATGTACCGGGTATCGCCAGAGGGCCGGTTACACTATGAATTACACCTTCGGTCCGCAGGGCAGACCCACAAGGCTGAGACTCAGAGCCAGTAGGCAGAACTGCCAGGCTGGGACTCAGAGCCAGAAGGCAGAGCTGCCAGGCTGGGACTCAGAGCCAGAAGGCAGAGCTACCAGGCtgggactcagagccagcaggcAGAGCTACCAGGCTGGGACTCAGAGCCAGTAGGCAGAGCTACCAGGCTGGGACTCAGAGCCAGTAGGCAGAGCTACCAGGCGGGGACTCAGAGCCAGTAGGCAGAGGCATAATTAATAGAACACTTAAAAGGTTATACTTCCCCTGTTActattcatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagatcaccaGTGGAAGGAGCACGGTGTGCCAATACAAAGTGTTTAACATGCAATTTATTGATTGATGAGTTTATgaatgtattaatttcttccctGTGTATTGAATTATCTATGTAACTATTTGTTTATTCATTGACCTTAACATATAGCAGTTTGTCACAGGGAATTTAACACTGGTTTGATTGCAAATGTTGTGTAAaaatattttctattgtgtttttaaAATTGGGCCTATATCTATAGCTGATAAACAACTAGGCTACTGAATCATATTAATACAATTATTATGAAAACTTGGAGACGACCAGCGGTGTAGATTATCAAGGTAAAAAGCAAACACGAATTATCATCTCATCAGGGAATTATGTTTCATTTGACTTGTTTTCGCCGTGAGGAGACCTGCAACAATCTTCTATAAAGAGACGCAATGCCAGAAATATCCCAACTACAGGAAGAGATTCCAGAGAAACATGTTCAATACTAATTTAATCCCACATAAGAAAGGCCTCTGTAATGCTATAGGCCTTTGTGCTGACTGGGTGCATGTTGGAATATAGGTGTTTAAATAAGGCTCATTAATTATGTCGTCGTGCCAAAGCCTCAACGCAGCAGCTAAGCTCAATGTGTGCTCAAATCAAATTAACGCTTCAACTGTATAAAAGTCGAAGGAAAATGCATTTGTATTTAAATCAGTGAAGTAAAAAAAGGTGAATGTGATCGCTTAATGTATTTGAAAAAATGATGATCCATTAGTTTACGAATAGGCCTActtcattttttttgtcttaataATGTGTTTAAAAATAATGTGAATGATATAATTTTGTGAAAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU865462 lncRNA upstream 960 90904587 ~ 90912813 (+) True G761227
TU865461 lncRNA upstream 6872 90903691 ~ 90906901 (+) True G761226
TU865455 lncRNA upstream 35134 90878295 ~ 90878639 (+) True G761221
TU865015 lncRNA upstream 50984 90805630 ~ 90862789 (+) True G760887
TU865022 lncRNA upstream 82015 90830941 ~ 90831758 (+) True G760894
TU865468 lncRNA downstream 1524 90918261 ~ 90918633 (+) False G761231
TU865470 lncRNA downstream 1589 90918326 ~ 90919334 (+) False G761231
TU865473 lncRNA downstream 1589 90918326 ~ 90918633 (+) False G761231
TU865467 lncRNA downstream 2064 90918801 ~ 90919570 (+) False G761231
TU865469 lncRNA downstream 2064 90918801 ~ 90919254 (+) True G761231
XM_036986791.1 mRNA upstream 83248 90799988 ~ 90830525 (+) True LOC110530865
XM_021614155.2 mRNA upstream 116835 90779252 ~ 90796938 (+) True LOC110530867
XR_005053010.1 mRNA upstream 128072 90779123 ~ 90785701 (+) False LOC110530867
XM_036986786.1 mRNA upstream 170689 90737231 ~ 90743084 (+) False ndufb3
XM_036986785.1 mRNA upstream 177660 90721147 ~ 90736113 (+) False pecr
XM_036986799.1 mRNA downstream 323149 91239886 ~ 91260968 (+) True rgs20
TU864981 other upstream 142736 90770117 ~ 90771037 (+) True G760857
TU864974 other upstream 170689 90737291 ~ 90743084 (+) True ndufb3
TU864957 other upstream 204121 90700295 ~ 90709652 (+) True LOC110530875
TU864805 other upstream 513301 90396922 ~ 90400472 (+) True G760718
TU864778 other upstream 524696 90374087 ~ 90389077 (+) False G760718
TU865491 other downstream 36255 90952992 ~ 90955079 (+) False G761244
TU865499 other downstream 36255 90952992 ~ 90955079 (+) False G761244
TU865506 other downstream 36255 90952992 ~ 90955079 (+) False G761244
TU865509 other downstream 36255 90952992 ~ 90955079 (+) False G761244
TU865515 other downstream 36255 90952992 ~ 90955139 (+) False G761244

Expression Profile