RNA id: TU755832



Basic Information


Item Value
RNA id TU755832
length 296
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G664026
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 1417839 ~ 1418134 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGTCTAAAACGTGTGGTTCATTTAAAGTGCTGTCTAATTTGGGCCTtttgtgttccaaatgacaccctattccctatacagtgcactacatggcaccctattccctatatagtgcactacatgacaccctattccctatatagtgcactacatgacaccctattccctatatagtgcactacatgacaccctattccctatatagtgcactacatgacaccctattccctatatagtgcactacatggcaccctattccctatatagtgtgctaGTGCATGCAGGATATACAGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU755773 lncRNA upstream 16617 1400123 ~ 1401222 (+) True G663987
TU755762 lncRNA upstream 36479 1380814 ~ 1381360 (+) True G663976
TU755753 lncRNA upstream 54039 1349492 ~ 1363800 (+) True G663967
TU755746 lncRNA upstream 91994 1323403 ~ 1325845 (+) False G663962
TU755741 lncRNA upstream 112664 1304759 ~ 1305175 (+) True G663958
TU755845 lncRNA downstream 18624 1436758 ~ 1438205 (+) True G664035
TU755850 lncRNA downstream 22816 1440950 ~ 1447748 (+) False G664039
TU755851 lncRNA downstream 26420 1444554 ~ 1447748 (+) True G664039
TU755853 lncRNA downstream 29723 1447857 ~ 1451795 (+) False G664040
TU755857 lncRNA downstream 31036 1449170 ~ 1451795 (+) True G664040
XM_021594757.2 mRNA upstream 550448 863590 ~ 867391 (+) False LOC110516199
XM_021594755.2 mRNA upstream 550448 863595 ~ 867391 (+) True LOC110516199
XM_021613996.2 mRNA upstream 744954 576383 ~ 672885 (+) True LOC110530744
XR_005052758.1 mRNA downstream 603734 2021868 ~ 2027055 (+) False LOC118965477
XM_036984539.1 mRNA downstream 607281 2025415 ~ 2027055 (+) False LOC118965477
XM_036984546.1 mRNA downstream 642063 2060197 ~ 2061837 (+) False LOC118965478
XM_036984560.1 mRNA downstream 873248 2291382 ~ 2350985 (+) False LOC110523088
XM_036984556.1 mRNA downstream 874234 2292368 ~ 2295883 (+) False LOC118965479
TU755748 other upstream 86657 1323403 ~ 1331182 (+) True G663962
TU755055 other upstream 658472 757827 ~ 759367 (+) True G663377
TU755028 other upstream 696804 717893 ~ 721035 (+) True G663359
TU754608 other upstream 1212769 204123 ~ 205070 (+) False G663012
TU755842 other downstream 16936 1435070 ~ 1436094 (+) True G664034
TU756396 other downstream 640361 2058495 ~ 2061976 (+) True LOC118965478
TU756487 other downstream 813211 2231345 ~ 2235813 (+) True G664560
TU756974 other downstream 1045541 2463675 ~ 2479558 (+) True G664930
TU757152 other downstream 1324502 2742636 ~ 2743607 (+) False LOC110529249

Expression Profile


TU755832 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
End of interactive chart.

TU755832 Expression in each Bioproject

Bar chart with 12 bars.
TU755832 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.