RNA id: TCONS_00035424


Basic Information

Item Value
RNA id TCONS_00035424
length 877
lncRNA type retained_intron
GC content 0.39
exon number 2
gene id XLOC_017969
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 14458930 ~ 14463012 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACGGGTCCGTGTCACAGGAGCGGCTGCGATCGGGCACTGGCATCACCGACATCTGGGTTGTGAATCTCCACCGTGGAGTCAGCCGGCATGGCCTCTGCCCCAGCACAGCAGCCAACGCTTACTGTAGAGCAGGCTCGAGGTAAGACTGCTTTACtgatttactgtaattttattaattattaaatccaATTTACGTACAACATCATAACAAGGGAAAACATCAAAAGGTGGGAAAGGAAATAAACAAAAGGATGTAAATGCAGAATTGCTTGATGTAAAGGCTGAATTGCGAGAAGTAAATGCAGAATTGTGAGAGGTAAACTTTGATTTGCAAGGTGTAAACGCAAAAATCGCAAAAACAGAATCGTAAGATATAAATGCTGAATTGTGAGACGTAAACGATAAATTGCGACATGTAAACATTGAATTGCGAGACAAATGttgaattgtgagatgtaaacgcTGAATCGTTAGACGTAAACGTGAATTGCAAGACAGACGTTGAATTGCAAGACGTAAACAGTGAATCAAGAGACATAGATGCTGAAATGCAAGACATAAACGTTGAATTGCGGGATGTAAACGCAAAATCGTGAGAGGTATGCTTAATTGCGAGACGTATACTTAAAATTGCATAGAATTATTAGACTTTAAGTCAATTTtgaactcagaattgtgagagtAAACTCAGAATTACGAGCAAAAATTAAACACAAACTCATAATTGTAAGACTTACACTCAGAATTGACTatgataattaaacaaaattgcTTAGAATTATTGGACTTATACTTCAAATTACGAGACGTCAACTCGCCGTCTTGAGGGAGAACCTCAGAGTTGTGATATTCCAAAGTCACTATTGTCTATAATG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000152668

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035415 lncRNA downstream 432064 14027314 ~ 14028035 (-) True XLOC_017964
TCONS_00035414 lncRNA downstream 432422 14026853 ~ 14027677 (-) False XLOC_017964
TCONS_00036811 lncRNA downstream 459098 13998311 ~ 14001001 (-) True XLOC_017962
TCONS_00035410 lncRNA downstream 563427 13894918 ~ 13896672 (-) True XLOC_017961
TCONS_00035405 lncRNA downstream 800666 13654585 ~ 13659433 (-) False XLOC_017958
TCONS_00035436 lncRNA upstream 410035 14873030 ~ 14873330 (-) True XLOC_017973
TCONS_00036458 lncRNA upstream 622091 15085086 ~ 15086084 (-) True XLOC_017976
TCONS_00036459 lncRNA upstream 631106 15094101 ~ 15096826 (-) True XLOC_017977
TCONS_00036460 lncRNA upstream 1168243 15631238 ~ 15633493 (-) False XLOC_017980
TCONS_00036462 lncRNA upstream 1168243 15631238 ~ 15634114 (-) False XLOC_017980
TCONS_00035420 mRNA downstream 138740 14258545 ~ 14321359 (-) True XLOC_017967
TCONS_00035419 mRNA downstream 201067 14147334 ~ 14259032 (-) True XLOC_017966
TCONS_00035418 mRNA downstream 253401 14144289 ~ 14206698 (-) False XLOC_017966
TCONS_00035417 mRNA downstream 345948 14098070 ~ 14114151 (-) True XLOC_017965
TCONS_00035416 mRNA downstream 346021 14096858 ~ 14114078 (-) False XLOC_017965
TCONS_00035425 mRNA upstream 169497 14632492 ~ 14680917 (-) False XLOC_017970
TCONS_00035426 mRNA upstream 172433 14635428 ~ 14680897 (-) False XLOC_017970
TCONS_00035427 mRNA upstream 172483 14635478 ~ 14665002 (-) True XLOC_017970
TCONS_00035430 mRNA upstream 220704 14683699 ~ 14781904 (-) False XLOC_017971
TCONS_00035429 mRNA upstream 220704 14683699 ~ 14781904 (-) False XLOC_017971
TCONS_00035421 other downstream 4473 14454908 ~ 14455626 (-) True XLOC_017968
TCONS_00035412 other downstream 447273 14003474 ~ 14012826 (-) True XLOC_017963
TCONS_00035409 other downstream 641589 13818395 ~ 13818510 (-) True XLOC_017960
TCONS_00035395 other downstream 1090756 13369227 ~ 13369343 (-) True XLOC_017955
TCONS_00035393 other downstream 1251347 13204066 ~ 13208752 (-) True XLOC_017952
TCONS_00035480 other upstream 3179814 17642809 ~ 17642923 (-) True XLOC_017998
TCONS_00035481 other upstream 3321452 17784447 ~ 17784568 (-) True XLOC_017999
TCONS_00035486 other upstream 3891414 18354409 ~ 18382352 (-) False XLOC_018004
TCONS_00035494 other upstream 4311134 18774129 ~ 18776493 (-) False XLOC_018010
TCONS_00035514 other upstream 5080267 19543262 ~ 19545552 (-) False XLOC_018020

Expression Profile

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