RNA id: TU764088


Basic Information

Item Value
RNA id TU764088
length 5520
RNA type TUCP
GC content 0.44
exon number 2
gene id G670733
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 8949694 ~ 8961731 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attttttgaacattttgtaaatgtattaaaaataaaacagaaatagcttatttacataagtattcagaccctttgctattagactcagaattgagctcagatgtatcctgttaccattgatcatccttgagatgtttctataacttcaTTGGAGTTCGcttgtgttaaattcaattgattggacataatttggaaaggcacacaactgtctatataaaggtcccacagttgacagtgcatgtcagagtaaaaaacaagccatgaggtcgaaggaattgcccatagatctggggaagggttccaaaacatttcagcagcattgaaggtccccaaaaaacacagtggcctccatcattattaaatggaagaagtttagaaccaccaagattgtttttagagctggccgcccggccaaactgatcaatcgctggaaaagggccttggtcagggaggtgactctgAATTTCGCTCTTGAGTTCATCTAGCTTGCAAACAAAACTACtccagctacaatacctcttttgccaattggcctggaccctttgttgACACGGAGCCCAGCCGATaaatcacgactggtctgccgacgtaatccCGTACattgtgccttcaaccggcctctgCCGGACGTCGTTGAAGACGCTTCTGCTACCGGTctgcatcctgactggttgcatcactgcctggtacggaaattgctcggcctctgactgcaaggcactacagagggtagtgcgtacggcccagtacatcactggggctaagctgcctgccacccaggacctctacaccaggtgatgtcagaggaatgccctgaaaattgtcaaagaccccagccaccccagtcatagactgttctctctactactgcatggcaagcggtactggagtgccaagtctaggacaaaaaggcttctcaacagtttttacccccaagccataagacacctgaacaggtaatcaaatggctacccggactatttccccaacccctctttttacgctgctgctactctctgttgatcatatatgtatagtcactaactatacattcatgtacatactacctcaattgagCCAacaaaccagtgctcccgcacactggctaaccgggctatctgcattgtgtgccacccacctcccgccaacccctcttttacgccactgctcctctctgttcatcatatacagtgagggaaaaaagtatttgatcccctgctgattttgtgcGTTTgcccactttaaaaaaaaatccataaaaacgcctgtcaaaaatgttattacttgatttgcattttaattagggaaataagtatttgacccttCTGCAAAACAtaacttagtacttggtggcaaaacccttgtggcaatcacagaggtcagacgtttcttgtagttttccaccaggtttgcacacatctcggaagggattttgtcccactcctctttgcagatcttctccaagtcattaaggttttgaggctgacgtttggcaactcgaaccttcagctcccttcacagattttctatgggattaaggtctggagactggctaggccactccaggaccttaacaCCTCTTGATATTCCCAAaaccgcatgcgggagcgtaatcatcgcctgacaataattagcataacgcaacggacataaatgtccctagaaaatattcctattcatgaaaatcacaaattaaatatattgagacacagtttagccttttgttaatcaccctgtcatctcagattttcaaaatatgccttacagccaaagctagacaagcatttgtgtaagtttatcgatagcctagcatcgcattatgccttgctagcagcaggcaaccttgtcacgaaatcagaaaaacaatcaaattaaatcgtttacctttgatgaacttcagatgttttcactcacgagactcccaggtagatagccaaagttcattttttcccaaaatattatttttgtaggcgaaacagCTCCATTTGtttttcacgtttggctgagaaatcgcccgggaattgcggtcaccacaacgccgaaaaatattccaaattagctccgtaatatcgacagaaacatggcaaacgttgtttagaatccattctcaaggtgtttttctaatatctattcgataatatatccgtcgggacaattcgtttttcaataggaccgattggagtaatggctacctctgtattttacgcaagaatctctctcggagccaccatgtgaccacttactcAATGTGGCCGCCTaaggctattcttcaacagaaatgcgtaaaactacgtcacaatgctgtagacaccttggggaatacgtagaaagcataagctcgttgatggtacattcacagccaaatatgtttccacctccatgtttgacggtggggatggtgttcttggggtcatagacagcattcctcctcctccaaacacggcgagttgagttgatgccaaagagctccattttggtctcatctgaccacaacactttcacccagttgtcctctgaatcattcagatgttaattggcaaacttcagatgggcatgtatgtgctttcttgagcagggggaccttgcgggcgctgcaggatttcagtccttcacggcgtagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattgacaagatcctcccgtgtagttctgggctgattcctcaccgttctcatgatcattgcaactccacaaggtgagatcttgcatggagccccaggccgagggagattgacagttcttttgtgtttcttccatttgcgaacaatcgcaccaactgttgtcaccttctcaccaagctgcttggtgatggtcttgtagcccattccagctttgtgtaggtctacaatcttgtccctgacatccttggagtgCTCTTTTGTACAttttggccatggtggagagttggAATCTGATAGATTCACTctacaaaaaatccagaaaaacacatgtcaaaaattttataaatgtatttgcattttaatgagggaaataagtatttgacccactttcaatcagaaagatttctgtggacaggtgtcttttatacaggtaacaaacagattaggagcactccctttaggAGTTGCAATATACTGCAGAGAGAActttgacagaactttgcaggcgaTCATACGTTCCAGGTATATTTCCAAAAAGtttgagcttctaattttaaaaatgtatttctccagaaataagtctctcactgttgacgCCTGTTATAGactcccctcagctcccagctgtgccctggacaccatatgtggaTTGATtaccccccatttatcttcagagttcgttctgctaggtgacctaaattgggatatgcttaacaccccaaacgtcctacaatctaagctagatgccctcaatctcacacaaatgatcaaggaatcCACCAGGTACAaacctaaatctgtaaacatggacaccctcatagatattatcctgaccaacttcccctccaaatacacctctgctgttttcaatcaggatctcagcgatcactgcctcattgcctgcatccattatgggtccgtggtcaaacgaccacccctcatcactgtcaaacgctccctaaaacacttctgtttcacactttctaatcgacctggcccaggtatcctggaaggatattgacctcatcccattaGTAGAGggtgcctggttgttctttaaaagtagttttctcaccatcttaaataagcatgcccctttcaaaatgttttgaattaagaacagcccttggttcactccagacctgactgccctcgaccagcacaaaaacatcctgtggcgtacttcactagcatcgaatagtcccagcaatatgcaacttttcagggaagttaggaaccaatacacacagtcagttgggaaagcaaaggctagctttttcaaacagaaatttgcatcttgcATCTAACTCCAAAaagggacactgtaaagtccattgagaataagagcacctcctcccagttgcccacttcactgaggctaggaaacactgtcaccaccaaaaatccacgataattgagaatttcaataagcatttcttacggctggccatgcttccctcctggctaccccaaccccggccaacagctcaacaccccccgcagctacttgcccaagcctccccagatTCTCCTTCacacaaatccagatagcagatgttctgaaagagctgcaaaacctggacccgtacaaatcagctgggctagataatctggaccctctctttctaaaatcatCTGcctccattgttgcaacccctatcactAGTCTGTTTAATCTCTTctctgattctttgatccacctctacgcagacgacaccattctgtatacatctggcccttctttggacactgtgttaacaaacctccaaacgagcttcaatgccatacaactctccttccgtggccttcaactgctcttaaatacaagcaaaactaaatgtgtgctcttcaaccgatcgctgcccgcacctgccctccTGTCcaatatcactactctggacggctctgacttagaatactacaaatacctaggtgtctggctagactgtaaactccttccagactccaatccaaaatgaaatctagaatcgactACCTATTTTGCAGCagtctccttcactcatgctgccaaacataccctcgtaaaactgactatccttctgatcctcgacttcagcgatgtaatttacaaaatagccttcaacactctactcagcaaattggatgcagtccatcacagtgtcatccgttttgtcaccaaagccccatgtaccacccaccactacgacctgtatgctctcgtcggctggccctcgctacatatttgtcgccagacccactggctccaggtcatctataagtctttgctccgccttatctcagctcactggtcaccataacaacacccacccgcaacactcgctccagcaggtatatctcaccggtcaaccccaaagccaacaccttcttcggacgcctttccttccagttctctgctgccaatgactgaaacgatttgcaaaaatcactgaagttggagacttctctccctcactaactttaagcatccgctatctgagcagctcaccgatcgctgcagctgtacacagcccatctgtaaacagcccatccaactacttacctcatccccatattgtttttattaacttttttttgctctttcaaggaccagtatttctacttgcacgtcatctgcacatctatcactccagtgttaatttgctaaattgtaattacttcgctaccatGGAATATTTATTGCTTTACCGCCTTACTccgtttgcacacactgtatatatatttttctattgttattgattgtacgtttgtttattccatgtgtaactaactatgtgttgttgttttttgtcacactgctttgctttatctttgccaggtcgcagttgtaaataagaacttgttctcaactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU764076 lncRNA downstream 17822 8914234 ~ 8938271 (-) True G670721
TU764072 lncRNA downstream 22613 8906652 ~ 8933480 (-) True G670718
TU764064 lncRNA downstream 26999 8904615 ~ 8929094 (-) True G670715
TU764073 lncRNA downstream 46499 8906247 ~ 8909594 (-) False G670718
TU764037 lncRNA downstream 78470 8870458 ~ 8877623 (-) True LOC118965490
TU764099 lncRNA upstream 6435 8968166 ~ 8968784 (-) True G670742
TU764113 lncRNA upstream 40876 9002607 ~ 9003638 (-) False G670756
TU764115 lncRNA upstream 40876 9002607 ~ 9007895 (-) False G670756
TU764116 lncRNA upstream 40876 9002607 ~ 9007895 (-) True G670756
TU764052 lncRNA upstream 95216 9056947 ~ 9057505 (-) True G670703
XM_036984675.1 mRNA downstream 76165 8864199 ~ 8879928 (-) False LOC118965490
XM_036984676.1 mRNA downstream 76165 8864199 ~ 8879928 (-) False LOC118965490
XM_021611458.2 mRNA downstream 93103 8758081 ~ 8862990 (-) True LOC110529325
XM_021611457.2 mRNA downstream 93104 8758081 ~ 8862989 (-) False LOC110529325
XR_005052769.1 mRNA downstream 93104 8758081 ~ 8862989 (-) False LOC110529325
XM_036984683.1 mRNA upstream 27714 8989445 ~ 8999682 (-) False LOC110529323
XM_036984682.1 mRNA upstream 27714 8989445 ~ 8999685 (-) False LOC110529323
XR_005052771.1 mRNA upstream 27714 8989445 ~ 8999685 (-) False LOC110529323
XR_005052772.1 mRNA upstream 27714 8989445 ~ 8999685 (-) False LOC110529323
XM_036984684.1 mRNA upstream 27714 8989445 ~ 8999694 (-) True LOC110529323
TU763857 other downstream 378313 8577051 ~ 8577780 (-) True G670549
TU763341 other downstream 613973 8340990 ~ 8342120 (-) True G670097
TU763125 other downstream 845135 8107871 ~ 8110958 (-) True G669918
TU762377 other downstream 1537858 7416025 ~ 7418235 (-) True G669281
TU762376 other downstream 1541857 7401464 ~ 7414236 (-) True LOC110529302
TU764280 other upstream 302119 9263850 ~ 9265093 (-) True G670905
TU764524 other upstream 384653 9346384 ~ 9347879 (-) True G671122
TU765218 other upstream 1009951 9971682 ~ 9972812 (-) False kif26aa
TU765219 other upstream 1009951 9971682 ~ 9972812 (-) False kif26aa
TU765319 other upstream 1153359 10115090 ~ 10121973 (-) False G671820

Expression Profile