RNA id: TU764280


Basic Information

Item Value
RNA id TU764280
length 1244
RNA type TUCP
GC content 0.46
exon number 1
gene id G670905
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 9263850 ~ 9265093 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctaatcattcaattaacagatAAATCCCATTAACAAtaccacttggatcctgtttcagtaataatgaaatcgaACACTATGtccgataatctaccatttatatatgTCATGTGTCAGTGTGCAGCGGGTaggacggagtcaggcgcaggacacagaactgagtaaaaaccTACTTTACTCGCAAATAATCACAAACTAATTCCATACAGGGAATAATAATCCAGCTCAACACAAAAGAGCGACCacataacaaagaacaaacacgcacaaaaccatgTGGGAAGCAAAGGGTTAACTAGGGAATTAAATTATGACAtcatggaaaccaggtgtgtgcaatcaagacaaaacacacagaaAAAGAAACGtagatcggcgatggctagaaagccggtgacgtcgaccgccgaacgccgcccgaacaaggagaggcaccaacttcggcggaagtcgtgacaatataggagtggttaaaacatgctaataatagtcctctgagtatataaaaaaaagtttggtattcctccactggtatgccatgtTGTTTATTAATCCgggtcttgatatgccacacctgtcagatgcatggattatcttggtaaaggagaaatgctctgtAAAAGAGATGTAAACtaatttctgcacaaaatttgagagaaataagctttttatgcgtgtggaacatttctgggatcttttatttcagctcatgaaacatggaaccaaccctttacatgttgcattgatatttctgttcagtatagaaATTCTCAAGATAATTGATTCAACAACCATCTACCAATATTGTTTTGGTTTAATTAATTACTTTCATTGTGCTTTAACCAGAAAATGAAGAGCTATATATGGATGTGTATTTAAGTAAGCTGACCGGCCTGGGTGATGGTGGACTAGCCGACATgcctggtggtggtggactagccGATAGGCCTGGTGGTGGAGGACTAGCCGACAGGCCTGGTGGTGGAGGACTAGTCGACAGGCCTGGTGGGGGTGGACTAGCCGacaggcctggtggtggtggtggactagtcGACAGGCCCGGTGGTGGAGGACTAGTCGacaggcctggtggtggtggaggactaGCCGacaggcctggtggtggtggaggactaGCCGacaggcctggtggtggtggtggactagccgacaggcctggtggtggtggtggactagccgacaggcctggtggtggtggtggactagccgacaggcctggtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU764278 lncRNA downstream 2795 9260856 ~ 9261055 (-) True G670903
TU764271 lncRNA downstream 13739 9249814 ~ 9250111 (-) True G670896
TU764270 lncRNA downstream 14038 9249599 ~ 9249812 (-) True G670895
TU764152 lncRNA downstream 104263 9158775 ~ 9159587 (-) True G670791
TU764051 lncRNA downstream 192667 9068995 ~ 9071183 (-) True G670702
TU764285 lncRNA upstream 8377 9273470 ~ 9273673 (-) True G670909
TU764293 lncRNA upstream 12623 9277716 ~ 9277971 (-) True G670917
TU764492 lncRNA upstream 33543 9298636 ~ 9352842 (-) False G671095
TU764494 lncRNA upstream 33543 9298636 ~ 9313407 (-) True G671095
TU764575 lncRNA upstream 178812 9443905 ~ 9501606 (-) True G671172
XM_036984685.1 mRNA downstream 138615 9012231 ~ 9125235 (-) False cdc42bpb
XM_036984686.1 mRNA downstream 138615 9012231 ~ 9125235 (-) False cdc42bpb
XM_036984687.1 mRNA downstream 138615 9012231 ~ 9125235 (-) False cdc42bpb
XM_036984689.1 mRNA downstream 138615 9012231 ~ 9125235 (-) True cdc42bpb
XM_036984684.1 mRNA downstream 264156 8989445 ~ 8999694 (-) True LOC110529323
NM_001160490.1 mRNA upstream 260776 9525869 ~ 9532652 (-) True LOC100301659
XM_021611467.2 mRNA upstream 379432 9644525 ~ 9650080 (-) True LOC110529336
XM_036986822.1 mRNA upstream 508912 9774005 ~ 9791069 (-) True LOC118965597
XM_036984713.1 mRNA upstream 560889 9825982 ~ 9884118 (-) False kif26aa
XM_036984711.1 mRNA upstream 560889 9825982 ~ 9993452 (-) False kif26aa
TU764088 other downstream 302119 8956093 ~ 8961731 (-) True G670733
TU763857 other downstream 686070 8577051 ~ 8577780 (-) True G670549
TU763341 other downstream 921730 8340990 ~ 8342120 (-) True G670097
TU763125 other downstream 1152892 8107871 ~ 8110958 (-) True G669918
TU762377 other downstream 1845615 7416025 ~ 7418235 (-) True G669281
TU764524 other upstream 81291 9346384 ~ 9347879 (-) True G671122
TU765218 other upstream 706589 9971682 ~ 9972812 (-) False kif26aa
TU765219 other upstream 706589 9971682 ~ 9972812 (-) False kif26aa
TU765319 other upstream 849997 10115090 ~ 10121973 (-) False G671820
TU765324 other upstream 849997 10115090 ~ 10121902 (-) False G671820

Expression Profile