RNA id: TU765339


Basic Information

Item Value
RNA id TU765339
length 517
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G671823
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 10027898 ~ 10028450 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGTGTCCATGGGGTTGATAGAGTCCAGGTGCAGCTCTGTGTCCATGGGGTTGATAGAGTCCAGGTGCAGCTCTGTGTCCATGGAGTTGATAGAGTCCAGGTGCAGCTCTGTGTCCATGGGGTTGATAGAGTCCAGGTGCAGCTCTGTGTCCATGGGGTTGATAGAGTCCAGGGAGGGGCCTCTGGGTTCTCATTGACCGCTACAATGCAGGCTAAGGCAGACCTGTCCATGCCAAGATTTTAAAGCGGTGGTCAGGGATTGGTGAGGAATTGCTCGTACATACTAATAACATAGCCCTATTATTACAATGCTGATCAAATCATCTTCACATCTAGGGGTTAAGCACCATATCAAACTTGTTTAAAAACTGTATTTCGAATGCTTTACAAGACCTATATATTGTTTGCTTAGCTAGAGGATTCAATGGCCTTCTGGGGCAAATGTGGCCAAAGCTGTATCCATatcaatgtttttgttgttgttgttgtttttatttctaactgtgtgtgtgtgt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU765215 lncRNA downstream 14875 9971682 ~ 10013023 (-) False kif26aa
TU765213 lncRNA downstream 39365 9928728 ~ 9988533 (-) False kif26aa
TU765205 lncRNA downstream 39365 9971682 ~ 9988533 (-) False kif26aa
TU765206 lncRNA downstream 39365 9971682 ~ 9988533 (-) False kif26aa
TU765208 lncRNA downstream 39365 9971682 ~ 9988533 (-) False kif26aa
TU765331 lncRNA upstream 6322 10034772 ~ 10121902 (-) False G671820
TU765371 lncRNA upstream 64402 10092852 ~ 10096091 (-) True G671853
TU765318 lncRNA upstream 86640 10115090 ~ 10121902 (-) False G671820
TU765322 lncRNA upstream 86640 10115090 ~ 10119132 (-) False G671820
TU765327 lncRNA upstream 86640 10115090 ~ 10119132 (-) False G671820
XM_036984711.1 mRNA downstream 34446 9825982 ~ 9993452 (-) False kif26aa
XM_036984712.1 mRNA downstream 34446 9825982 ~ 9993452 (-) False kif26aa
XM_036984713.1 mRNA downstream 143780 9825982 ~ 9884118 (-) False kif26aa
XM_036986822.1 mRNA downstream 236829 9774005 ~ 9791069 (-) True LOC118965597
XM_021611467.2 mRNA downstream 377818 9644525 ~ 9650080 (-) True LOC110529336
XM_036984715.1 mRNA upstream 52387 10080837 ~ 10085586 (-) False LOC110529344
XM_021611478.2 mRNA upstream 52387 10080837 ~ 10086403 (-) False LOC110529344
XM_021611477.2 mRNA upstream 52387 10080837 ~ 10086410 (-) True LOC110529344
XM_036984725.1 mRNA upstream 112219 10140669 ~ 10148583 (-) True myh6
XM_021611485.2 mRNA upstream 124345 10152795 ~ 10186202 (-) False LOC110529348
TU765218 other downstream 55086 9971682 ~ 9972812 (-) False kif26aa
TU765219 other downstream 55086 9971682 ~ 9972812 (-) False kif26aa
TU764524 other downstream 680019 9346384 ~ 9347879 (-) True G671122
TU764280 other downstream 762805 9263850 ~ 9265093 (-) True G670905
TU764088 other downstream 1066167 8956093 ~ 8961731 (-) True G670733
TU765319 other upstream 86640 10115090 ~ 10121973 (-) False G671820
TU765324 other upstream 86640 10115090 ~ 10121902 (-) False G671820
TU765333 other upstream 86640 10115090 ~ 10121973 (-) False G671820
TU766004 other upstream 709774 10738224 ~ 10738686 (-) True G672436
TU766687 other upstream 1316023 11344473 ~ 11344782 (-) True G673053

Expression Profile