RNA id: TU765319


Basic Information

Item Value
RNA id TU765319
length 3516
RNA type TUCP
GC content 0.42
exon number 4
gene id G671820
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 10034772 ~ 10121973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgctgggccagcagagcaaaacatttttgggactgtatcaacagtggactaatgataAAAATACCAGAATATAGTTTGAGTGGATTATTTCTTTAATGAAACATTGAAATAAGCATTACCATTTCTTGCTAAGTCATGCCATGTAATTATAAGCCTTTTACTATTACTTATTATCGATAGGAAATAGAAGGTAACCACTGAACATGCTAATTCTGCTGTTGTCAAATATGCAACTGCCACTCCAGAGAACCACATAGACTTTGTCTCCTTCCACTAGGTCTAGTATGACTCCATTGGTCCCGCTGTGGTAAATATTGGGTTTTGGGTTGGCAGTTTCATAGACGGCAGCCATGTTCACACCGTTCTTTAGCAACGCTGCATTCGCCTTCCCTGAATTCCCAACATTGCAAGTGAATGTGAAGTAGTAGGCCCCTCTCACAAGTGCAGTAAAGACACCTGCATCAGGTGGGAAAGCTGTATCTGGGTTATATGCTTCACCAATGTTTGTAGTGACCTTTTTATACACCACAGTGGTGTACTTGTCGAAAGGTCCTAAGTGATAATGTTCATCACTGACCCTAACTGAAGCGGTGAAGGCCACTTTTGGTTTGCTCCAGTTTCTCCACCCGGGCTGTCAGTTCCCTCAGCAGCCCGTCAACCTCACTCTCCGTCTGAGTCTCAACCATACAACAGCAAAGCAACACCACCACAGCCAAAACAGACTCCATCGCAGGGCTTTCAACGAACTGGGTGGGAGAGGATTGCTGAGATGTCTGACTGCTCCTCATATGTTGAAATAGATTGGTTTATTTAAAATGTAACCAGGGTTGCAATATTCTGGGAACATTTCAAAATTCCCCAGCTATTGCAGAAATCCTGGctggaagattcctggaatcagacgggaataagcaggaaatcctggACTCCTCCAACCGGGATTTCTGGACCACCTGGGAATTTTGCCGTaattaccagaattttgcaaccctggtATCAGCAAAGTTCACTCCACTCTGTGCGTCAACAAATGACATCACCGACCCTGTAATAGAGCAATAAAGACAAAAAAAAGCATATTTTGATTAAAGGAGCATTCCACAATATTCCCATAAAATGTATGTCTATGTTTCATCTATAGAAGTAAAGGAAGAAAAGAACTAAACATAATACCCGTATGGCCAACTGACATAACCTTGAAATAGCAGATATTGATGATAACAAGAAACACACTTGTTTCTCTATcaccaatatattttttttaaatgttaaaaaCATTCTTGAGACATGGGTAGGTAGGATccttatttttgttttattttccaGAACAGAACAAAAAGCATTTTATTTAATCAAGTTATGTGGACAAAACTGTTTTCTGTGAGACTGCAGTATGTATGGTACATTCAGTttctgagtgttgaagtgtgccactggctatccttaaaaaaaaagaaaatggttccgtctggtttgcttaatataaggaatgtgaaatgattaacacttttacttttgatacttaagtatatctaAAACCAAatccttttactcaagtagaattttactgggtgactcactttcacttgagtcattttctattaaggtacctttacttttactcaagtatgacaactgggtactttgTCCACCACCGACACCAGCGTGTGGTACTGTTTCTCCAGTGCTGGTcctcgtggattcagagctagtCCACCTGACTTCACTCACCTCCAGGACCTGTAGCTTGTATCTCCTCATTTTGTTGGAAACCCGTGACAGCTTTCTGGACTCAAACATTGTTCAAATATTATAAAAGCCAAAGTGCAGTTTGTTTTTGGTGTTCAGTGCTCCCATTAGTCAGTCACTAGTTTCCCGTAGGCTTTCACTGATGGTGCTCATACAAGTCTGGGACACTGGGAGATTTTTGCATCCAATTGTAGAACTGTGATTTGTTTTTGCGGGTTGGGGTTGTTAGTCCCATGGCCAACAGTCCAACCTTTCTGTTTTCAGGAGATGTTGGAGATGATTTGTTAGTCCTCTCCCCTGACATTTTGTCTTCCTGGTGATGGATTACAGTCTCATACAACGTGAGGCCAGACAGGCTTTAGGTTGTGTACAAGCAGCCCCGGTGCGTCAAGTCTAACCAACTACTGCTATGTTGGTTTTACCAGTTCATACCAGCAGCGCAAAatattttgggactgtatcaacagtggactaatgaaaaaaacACCAGAAGACAGTTTGAGTGGATTATTCCTTTAATGAAATGTTGAAATAAGCATTTCCAATTCTTGCTAAGTCATGCCATGTAAATATCAGACTTTTACTATTACTTAGTAGTGATAGGAAATAGAAGGTAACCACTGAACATGTTAATTCTGCTGTTGTCAAACATGCTACTGCCACTCCAGAGAACCACATTTACTTTGTCTCCTTTCACCAGGTCTAGTGTGACTCCATTGGCCCCGCCGTGGTAAATACCGGATTTTGGGTTGGCAGTTTCATAGACGGCAACCATTTTCACATCGTTCTTAAGCAACGCTGCATTCGCCTTCCCTGAATTCCCAACATTGCAAGTGAATGTGAAGTAGTAGGCCCCTCTCACAGGTGCAGTAAAGACACCTGCATCAGTTGGGAAAGCAAGATGGACAAAAACAACTTTGTGTGATTATGACACAGCAGAATATGGACATAAAGACACCTCAGTAAAATACATAAAGGTGCAAGAGACTGAGAGTCTTATCAAGTGGGTAAATACCTGTATCTGGGTTATATGCTTCACCAATGTTTGTAATGACCTTTTCATACACCACAGTGGTGTTCTCGCCGAAAGGTCCTAAGTGATAATGTTCATCATTGATCATAAAGGAAGCGGAGAAGGCCACTTTTGGTTTGCCTGTAAAAATACATTACGTTCAGATTACTACACATCAAACGTTTGAAGCCAGATAGTTTGACAGCCAGAACTTTTGCACTTCTTTCCAATGATACTGTGAAATAATGACAGAGCATGATGAACAGCAACTTCCATCATgcatgagtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacccgtagGAATACTGACACACAGTGTTCCTGCACGCCCGTAAGAATACTGACACACATAAAGAAGCTAAGTCTAGGGACAATGATAAGTAATGGCCAACATTACCATTATACTCACTCTCCAGTTTCTCCACCCGGGCTGTCAGTTCCCTCAGCAGCCCGTCAACCTCACTCTCCGTCTGAGTCTCAACCATACAACAGCAAAGCAACACCACCACAGCCAAAACAGACTCCATCGCAGGGCTTTCAACGAACCGGGTGGGAGAGGTTTGCTGAGATGTCTGACTGGTCCTCATATGTTGAGTTAGATATATATGGATTGGTTTATTTAAAATGTAACCAGGGTTGCAAAATGCAGGCAACTTTTCAAAATTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU765371 lncRNA downstream 18999 10092852 ~ 10096091 (-) True G671853
TU765339 lncRNA downstream 86640 10027898 ~ 10028450 (-) True G671823
TU765215 lncRNA downstream 102067 9971682 ~ 10013023 (-) False kif26aa
TU765213 lncRNA downstream 126557 9928728 ~ 9988533 (-) False kif26aa
TU765205 lncRNA downstream 126557 9971682 ~ 9988533 (-) False kif26aa
TU765386 lncRNA upstream 6721 10128694 ~ 10128982 (-) True G671868
TU765392 lncRNA upstream 10458 10132431 ~ 10133151 (-) True G671870
TU765393 lncRNA upstream 11401 10133374 ~ 10133784 (-) True G671871
TU765394 lncRNA upstream 12815 10134788 ~ 10135295 (-) True G671872
TU765395 lncRNA upstream 14737 10136710 ~ 10137160 (-) True G671873
XM_021611477.2 mRNA downstream 28680 10080837 ~ 10086410 (-) True LOC110529344
XM_021611478.2 mRNA downstream 28687 10080837 ~ 10086403 (-) False LOC110529344
XM_036984715.1 mRNA downstream 29504 10080837 ~ 10085586 (-) False LOC110529344
XM_036984711.1 mRNA downstream 121638 9825982 ~ 9993452 (-) False kif26aa
XM_036984712.1 mRNA downstream 121638 9825982 ~ 9993452 (-) False kif26aa
XM_036984725.1 mRNA upstream 18696 10140669 ~ 10148583 (-) True myh6
XM_021611485.2 mRNA upstream 30822 10152795 ~ 10186202 (-) False LOC110529348
XM_021611484.2 mRNA upstream 30822 10152795 ~ 10191112 (-) True LOC110529348
XM_036984727.1 mRNA upstream 72877 10194850 ~ 10212507 (-) False LOC110529349
XM_036984726.1 mRNA upstream 72877 10194850 ~ 10212544 (-) False LOC110529349
TU765218 other downstream 142278 9971682 ~ 9972812 (-) False kif26aa
TU765219 other downstream 142278 9971682 ~ 9972812 (-) False kif26aa
TU764524 other downstream 767211 9346384 ~ 9347879 (-) True G671122
TU764280 other downstream 849997 9263850 ~ 9265093 (-) True G670905
TU764088 other downstream 1153359 8956093 ~ 8961731 (-) True G670733
TU766004 other upstream 616251 10738224 ~ 10738686 (-) True G672436
TU766687 other upstream 1222500 11344473 ~ 11344782 (-) True G673053
TU767508 other upstream 1862861 11984834 ~ 11990363 (-) False LOC110529377
TU767500 other upstream 1863502 11985475 ~ 11994689 (-) False LOC110529377
TU767509 other upstream 1863502 11985475 ~ 11997491 (-) False LOC110529377

Expression Profile