RNA id: TU765371


Basic Information

Item Value
RNA id TU765371
length 3208
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G671853
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 10092852 ~ 10096091 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTATCAATcttgtttatttaattttttatttcatgCAATCAATTGCTGTATAATGACCAACTATTGTTTATCCTAAAAATGTCTCATATCGACAGTGTAGTTACAGCAATACCATTCATCATATACAATTTACAATGCAAATGAACATGGCTCTATGGTTGCATTTACACAAGCAACCCAATTCTGATCTatgcccaattattggcaaaagagctgTTTTGATTGGTCAAGATACCAATTATAGGGTGAAAAGATTTGGCGGcatgtgtaaatgcagcctttgTTTTCTGCCCTGTGTGTGGATTAGAGAACAAATCAGTGCTCCCTCCGATAAATATATTGGATTGATGTCAGGTGCAGACCATAGGAGCTAGTCCTAGTTTGGCTGTGTGTAGTTAAAGCAAAATCACTCATATACGATTTGCAATGCAAATGAACATAGCtctatggctgtgtttacacaggtgACCCAATTCTggtcttttgcccaattattggcaaaagatctCATCTGATTTGTCAAAATATAAAATCTGAATTAGTCTTCCTGTGTAAACAGCCTTTGTATATTTTTCCTTCGTGAAATATAAAATACTACAACCCTTGCCATGGTCGTCTCCTTACAATCTCTCCCAAGTGGGTTAACTCTATAAAAGCCTCACTTGAGGTGACATGAGTTACCAGATTGTTTGCATACCAACACATTTTCGTACCCATTTTGCATTACTTTAACGGTTCTAAAAAGCAATAATAAATTTAAATTGCAGCAGTAAAAACACAGAAATTACGAATGACTTATGCTTTTGTTTGACACCGGTTTGGTTTTCAAACTCATCTCTCTCTAATATACTTAATGAAAGAAATACATTTTCACCCCTAACAGCCATGTTACTGTctgaagaaaaaataaaaaaaatgataattTTAATTTGTTTTACCTTGCTTTTGATTGGATAGGGCCCTGAGTAGTAGATCATATACAGAAATTAGCTTGCTTGCTCATTAATAATTCTTAATTTACCCCCTGAAGGGATGTCACTCCTGTTTAGGTTATTAAAATACAACctccatacagatgtaggatcttaattttgaCCTATATAgcaaaaataatcctgcagctaaagtatttgaacaCAATGTTTCTTGATatgtggttaggctattagctggtcaaaagtaggctacatgaaaattcaatttctgttaatatgtgttagtgtgggttttcagtaaatTTACAATTCAGGaatattctcagcaacaaaagagtgatcaaattaagatcctacatctgtacatggtCATgttgtaggcctacattatgatagCTTAAAATaactgttaactcatacccaaataatgttgttgactcattcTATACTTGTAATTGTGGCCAAAGTTTTTGGCCAAGGCGTCTCAATGAGGGGTTTGATTAATTTTGTAGGCATGTTTAAACATGTAGGCATGTTTTGCACCGGGTGAAAGTTGATTGCATTCATTTTGAAACTGGGCTGCCTTCAGGCATGAGCTAGGTGTGACGTAGGAGCAcgtggagtaatgagtaggactaatgcaaaagtgattgcttttgagctttatctgccttcccaatgaaaatgagcaaattctaacatttgttttatggaatatatatgtatgtttctggacgatgcaccatgctgccttgttgacaaaatGACCGAGCGGCGTAGATTACTTTTCCGTTTGAGAAGGGcgctcttccctcccctctttcgCCCGATGATAGAACGTGCCTTTGCCAGGTACCCGGCTGGTCAGTATAATCGAATCCGTCCACTGACTCATTggctgagctggccaatcagctgtTTACTTGTCATGGATATTTGTATCGATTTTTATCGACCGGTTTACGCCCACAccacagaaaagctgctttttaactttttaattctttttttttttttcaataaataTATTTCAGTCATATTAACCAGGTTTCCAACTAACcttttttatgcgagtaaagtataTGTCAGATATGAAATGTaacgacaggcctgatggaaactgaAAGGTTTTCGGTAAACTTtctaaatgtcgacaaaacaaaatacactagacaaggtgggatcttttttttgtgtctgtaaaatgtattatgtgagaaatgtcagtggaaacgcttttaataataatgtcatcatgtaggctagggttccccaactggcagcctGGGGGACAAATTTGGCCCAAGTTTTCTGTGaaaatttgtatatatatattttttattgttggTCAAAAAAGACTGTacaaacaccagcaaatcagctccaagtgattttagaTTTGTAaatagagagatatacagtatgtgatcgtaagcaaggtttgaaatgattctgTTTTAGTTAAATATTATATAGTTTGGGCTTTTTGAGGTCAATTTGCAGTTGACAAATTacttgtaattatgttctggccacctgaccatccactcaagaaaagAAAGAATCAGTCCACGGCTGAATCTAgatgatgatccctgatgtaggcTATAAGTGCGCTCTAGCCAAGAGTACTGTATCTGTGCACTGTTGGCTGGAGCGCACTGCCAATGCCGGACTGGGAACATAATGACATTTTTTGGGGTGAGAAAACTATAAAAATAGTTGAATGTGATGGAAAcctatttaacttgtattttttgttgtcggtacatgggaatttaatcGCAAAAGCTATTTTTACgcgcactacgtcatcacgcacagcctttaatctgcaacatctctggtggaaaAATGCGCATTTTAATTTTCATGCAATTTTTTTTTcgaatattcacatggaaatctGTCACCAttagatggaaacctagctatagtAATTAATTCTAgatcatatttcatagaaatttGGAAACACCGGATAGCTACTTTAAGAGGCTTTACCAGCTTCCACACTACTGCATGTCATTTCAACATGTTTTAAAAGGATTATGTTCTCTCTGCAGTGCAACAAAcaaaaggattagcatttcacgATAGCAACACGCGTGACATTGTCCAACATGCAGGAGTCATACTGCTCAAGTAACTCCCCGCAATATAACACTACCAATGTAGGACAAAGCTTAATATTGGCCGTGTAATGCAATCAAACAAAagttcaaaacaacagaaaatgtTAAAGGAAGCTTCCGACTAAATCTATCCAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU765339 lncRNA downstream 64402 10027898 ~ 10028450 (-) True G671823
TU765215 lncRNA downstream 79829 9971682 ~ 10013023 (-) False kif26aa
TU765318 lncRNA upstream 18999 10115090 ~ 10121902 (-) False G671820
TU765322 lncRNA upstream 18999 10115090 ~ 10119132 (-) False G671820
TU765327 lncRNA upstream 18999 10115090 ~ 10119132 (-) False G671820
TU765328 lncRNA upstream 18999 10115090 ~ 10121902 (-) False G671820
TU765323 lncRNA upstream 21403 10117494 ~ 10121902 (-) False G671820
XM_021611477.2 mRNA downstream 6442 10080837 ~ 10086410 (-) True LOC110529344
XM_021611478.2 mRNA downstream 6449 10080837 ~ 10086403 (-) False LOC110529344
XM_036984715.1 mRNA downstream 7266 10080837 ~ 10085586 (-) False LOC110529344
XM_036984711.1 mRNA downstream 99400 9825982 ~ 9993452 (-) False kif26aa
XM_036984712.1 mRNA downstream 99400 9825982 ~ 9993452 (-) False kif26aa
XM_036984725.1 mRNA upstream 44578 10140669 ~ 10148583 (-) True myh6
XM_021611485.2 mRNA upstream 56704 10152795 ~ 10186202 (-) False LOC110529348
XM_021611484.2 mRNA upstream 56704 10152795 ~ 10191112 (-) True LOC110529348
XM_036984727.1 mRNA upstream 98759 10194850 ~ 10212507 (-) False LOC110529349
XM_036984726.1 mRNA upstream 98759 10194850 ~ 10212544 (-) False LOC110529349
TU765218 other downstream 120040 9971682 ~ 9972812 (-) False kif26aa
TU765219 other downstream 120040 9971682 ~ 9972812 (-) False kif26aa
TU764524 other downstream 744973 9346384 ~ 9347879 (-) True G671122
TU764280 other downstream 827759 9263850 ~ 9265093 (-) True G670905
TU764088 other downstream 1131121 8956093 ~ 8961731 (-) True G670733
TU765319 other upstream 18999 10115090 ~ 10121973 (-) False G671820
TU765324 other upstream 18999 10115090 ~ 10121902 (-) False G671820
TU765333 other upstream 18999 10115090 ~ 10121973 (-) False G671820
TU766004 other upstream 642133 10738224 ~ 10738686 (-) True G672436
TU766687 other upstream 1248382 11344473 ~ 11344782 (-) True G673053

Expression Profile