RNA id: TU765394


Basic Information

Item Value
RNA id TU765394
length 508
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G671872
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 10134788 ~ 10135295 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atattggcgggaactggaacacactgtcgtacacgtcgatccaggaactgggacattttcagcttccaggaattgtgtacagatccttgcgacatgaggccgtgcattatcatgctgacacatgaggtgatggcggcagatgaatggcacaacaatgggccttaggatctcgtcacggtatctctgtgcattgaaattgccattgataaaatgcaattaagtttgttgtccgtagcttacgcgtgcccataccataaccccaccgtcacCATAGGGcaacaacgttgacatcagcaaaccctttgcccacacaacgccatacacgtggtctgctgttgtgaagccaaattctctaaaacgaagttggaggtggcttatggtagagaaattaacattacattttctgacaACAATTCTGGAGAACATCCCTgctgtcagcatgacaattgcacgctccctcaaaacttgaggccctgtgtggcattgtgttttgtgacaaaactgcaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU765393 lncRNA downstream 1004 10133374 ~ 10133784 (-) True G671871
TU765392 lncRNA downstream 1637 10132431 ~ 10133151 (-) True G671870
TU765386 lncRNA downstream 5806 10128694 ~ 10128982 (-) True G671868
TU765329 lncRNA downstream 12815 10117494 ~ 10121973 (-) True G671820
TU765323 lncRNA downstream 12886 10117494 ~ 10121902 (-) False G671820
TU765395 lncRNA upstream 1415 10136710 ~ 10137160 (-) True G671873
TU765396 lncRNA upstream 2003 10137298 ~ 10137522 (-) True G671874
TU765402 lncRNA upstream 15962 10151257 ~ 10151979 (-) True G671879
TU765450 lncRNA upstream 110885 10246180 ~ 10246388 (-) True G671925
TU765452 lncRNA upstream 119408 10254703 ~ 10254927 (-) True G671927
XM_021611477.2 mRNA downstream 48378 10080837 ~ 10086410 (-) True LOC110529344
XM_021611478.2 mRNA downstream 48385 10080837 ~ 10086403 (-) False LOC110529344
XM_036984715.1 mRNA downstream 49202 10080837 ~ 10085586 (-) False LOC110529344
XM_036984711.1 mRNA downstream 141336 9825982 ~ 9993452 (-) False kif26aa
XM_036984725.1 mRNA upstream 5374 10140669 ~ 10148583 (-) True myh6
XM_021611485.2 mRNA upstream 17500 10152795 ~ 10186202 (-) False LOC110529348
XM_021611484.2 mRNA upstream 17500 10152795 ~ 10191112 (-) True LOC110529348
XM_036984727.1 mRNA upstream 59555 10194850 ~ 10212507 (-) False LOC110529349
XM_036984726.1 mRNA upstream 59555 10194850 ~ 10212544 (-) False LOC110529349
TU765319 other downstream 12815 10115090 ~ 10121973 (-) False G671820
TU765333 other downstream 12815 10115090 ~ 10121973 (-) False G671820
TU765324 other downstream 12886 10115090 ~ 10121902 (-) False G671820
TU765218 other downstream 161976 9971682 ~ 9972812 (-) False kif26aa
TU766004 other upstream 602929 10738224 ~ 10738686 (-) True G672436
TU766687 other upstream 1209178 11344473 ~ 11344782 (-) True G673053
TU767508 other upstream 1849539 11984834 ~ 11990363 (-) False LOC110529377
TU767500 other upstream 1850180 11985475 ~ 11994689 (-) False LOC110529377
TU767509 other upstream 1850180 11985475 ~ 11997491 (-) False LOC110529377

Expression Profile