RNA id: TU766687



Basic Information


Item Value
RNA id TU766687
length 310
RNA type TUCP
GC content 0.44
exon number 1
gene id G673053
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 11344473 ~ 11344782 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccatgatcactctggatgaactgcagacatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagcccatcaccctgaacacaccatccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU766683 lncRNA downstream 1929 11342241 ~ 11342544 (-) True G673049
TU766612 lncRNA downstream 74564 11267278 ~ 11269909 (-) False G672982
TU766613 lncRNA downstream 74564 11267278 ~ 11269909 (-) True G672982
TU766622 lncRNA downstream 104785 11239422 ~ 11239688 (-) True G672989
TU766620 lncRNA downstream 106486 11237780 ~ 11237987 (-) True G672987
TU766836 lncRNA upstream 54680 11399462 ~ 11404873 (-) True G673188
TU766934 lncRNA upstream 194416 11539198 ~ 11539399 (-) True G673285
TU766974 lncRNA upstream 221264 11566046 ~ 11567129 (-) True G673318
TU766978 lncRNA upstream 229872 11574654 ~ 11575246 (-) True G673322
TU767060 lncRNA upstream 297485 11642267 ~ 11642693 (-) True G673403
XM_036984743.1 mRNA downstream 134039 11185737 ~ 11210434 (-) False LOC110529181
XM_021611502.2 mRNA downstream 160120 11162434 ~ 11184353 (-) False LOC110529362
XM_036984742.1 mRNA downstream 182404 11148108 ~ 11162069 (-) True LOC110529363
XM_036984741.1 mRNA downstream 182405 11148108 ~ 11162068 (-) False LOC110529363
XM_021611497.2 mRNA downstream 412010 10921591 ~ 10932463 (-) True mrpl19
XM_021611507.2 mRNA upstream 10563 11355345 ~ 11520698 (-) True LOC110529367
XR_005052774.1 mRNA upstream 402273 11747055 ~ 11764395 (-) False LOC118965492
XR_005052773.1 mRNA upstream 402273 11747055 ~ 11764400 (-) True LOC118965492
XM_036984754.1 mRNA upstream 484177 11828959 ~ 11839997 (-) True LOC110529371
XR_002474370.2 mRNA upstream 538278 11883060 ~ 11885849 (-) False LOC110529372
TU766004 other downstream 605787 10738224 ~ 10738686 (-) True G672436
TU765319 other downstream 1222500 10115090 ~ 10121973 (-) False G671820
TU765333 other downstream 1222500 10115090 ~ 10121973 (-) False G671820
TU765324 other downstream 1222571 10115090 ~ 10121902 (-) False G671820
TU765218 other downstream 1371661 9971682 ~ 9972812 (-) False kif26aa
TU767508 other upstream 640052 11984834 ~ 11990363 (-) False LOC110529377
TU767500 other upstream 640693 11985475 ~ 11994689 (-) False LOC110529377
TU767509 other upstream 640693 11985475 ~ 11997491 (-) False LOC110529377
TU767510 other upstream 640693 11985475 ~ 11990444 (-) True LOC110529377
TU767583 other upstream 673834 12018616 ~ 12025742 (-) True G673863

Expression Profile