RNA id: TU767583


Basic Information

Item Value
RNA id TU767583
length 2382
RNA type TUCP
GC content 0.51
exon number 12
gene id G673863
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 12018616 ~ 12025742 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATTCTCTTTATTTTTTAACAAAAATGTCATTTTGTTTTCACACACAATCAAAATAGTTGTGTAAGAAAAATCTACACAAGAAGTCCCACATTCCCCTTTGTCCTGCACAGACAATGTAAAATCACTGGTGTTCtcaccgagagagagaaaaaaaaaagactaaATCAGAAAATAGAATGTTCAGTAGGTCTGTAAGGCGAAGGATTCTAGATGGATAGAACCTGTTTTGGCATGGACATTGaggggcttccaccattttaaagtagtcaactgggtggggattcctatgggataaggaaggatcacatgattccatcctggtcatcaggagggatcagccaatgaatgaCACTCTTGAGCAAACGTTCCATAACTGCAGTTGCCAGTAAATCGCCAACTTTGGCTTTATACCGGTTCAAACATAACACTAGGTTGCAGTGCACCTTTTCAGTTTGCTTGCCAACTTCTAGaaggactacttcaaaatggagtttgcctcaatggcgctgcctgTGCACTCAGACGCCATAATGGGACTTATATAAAAAGATAATATCTCTATCATTCTCTACGGGCGAATCTCCTGCAGGCCAAGCTTCTCCCCACTTGATGGAGATGATGTGAGaagctgtatgtctctctggtcCTGTTCAAATACTTCAGAAATGTACACTTATTTCCTTACCTTCTACCTTCCTTTAAATAATCACAGATCTGAATTGATTGGATTGGTCAAATTGGCTGGTAACTTTGCTTTCACCTCCTATCACTTATAGATCTGTGCTCTATCAAGGTAACAAAGGAAGGATACTTTTCTGAATTATTCAAACAGGGTTATGCTCTTCATTTCTTTCCTCTTCGTGAGTACTTCAGTAACCGGGCGACCCAATCTACACATTGTTccatgggagaggagagacgggtcgCGCCaagttagaccagacagacaagATGGCGCCCAACCGTATCCGTCTGGATCGGCCCGCCCGGAAAGCTGGGCTCTCACAACTCTTCCTTCCCAATGTCGTCGTCCAAGTCCACGTCACTCAGGTCGTAGTCATCCACCACGGGAAGCTCTCCATCTTTGCCGTCCCAGGCATCAACTGAGTTGATCTTAGGCAAAGCCCCGCCCCCAACGGTAGCAGTGGAGCCACGGCCTACAGACAGATCCCTGAGGAACTCGTGAATGCCGGTCTCGCTGAAAGAGCCCTTGAGCAGGGCGAACTTCATCTTGCGGGCGTTGATGGCCGTCATGGCGGGGTAGCCGAACCCTCCGATGCCCAGCGACGCCTCCAGCTCCATCTGAGCACCAGCCTCAGTCCACAGCCAGCCCCACATTTTCTTCTTGTACTTCTCTGCCATCTTCATCATCACCTCCAGGTAGCTGTTCCTGCCTGCTGCACCTGTGTCCAGGATGTGGGGCAGCACAGCGATGACACAGAGCTGGTAGTCTTCGCAGGTCTTCTTTAGGACATCTGCGTTAAGGATCTCGAGCAGTTCAGGAGGAGCGGCGTTGTCAGAGAACAGGTCCAGAGCGCGGGCAATGATGTCACCTCGGATCCTTCCCCCCTGGTAGTCCTCAGGCTCCTCCCCCTTCTTGAAGATCTTAATTGTGGGGAATCCACGGATCCCGTAACGGCTGGCCAGACCCTGGTGCACAGTGGCGTCCACGGCTCCCAGGTGGACCTTGTCCTTGGTCTGCTCCTTGACGGCCGAGGCTGCGGCCGCCCACTCAGGCTCCAGGCTCTTGCAGTGGCCACACCAGGGGGCAAAGAACTCCACCAACCACACTTCACCACTGTCCAGAACCAGCCGGTCAAAGTTGTCATCCGTCAGCTCCACAACATTCTTCTtacttccaccaccaccaccCTGTCTGTTGTTGTCAGAACCACCTGACCTGCCACTCATCCGGTCCTTCACTAGAGTACGGAGAGTATTCAGGGCTCCGTCCACTATGGCCTGGCTACTACGCCCACCTTGGTAATCATCAGGCTTGTTCTTATTGGCCCCAAAGATCTTGATGGAAGGGAAGCCTCTGACACCGTACTGACCGCCCAGGGACTTGTGCTGGTCGGCGTCCACTGCACCGACCTTAACAATGCCCTTCAAGGCTGTGGCTGTCTTCTTCCAGTCAGCAGTCAGGCTCTGACAGTGTCCACACCAAGGAGCGTAAAACTCAATGAGCCAGAGGCTGTCGCTCTGAAGAACCTCTCGGTTGAAGTTGGAGGGGTTGAGTTCAACGACATCATCAGCAGCGGAGTAGAATCCCTGGGCCATCAAGACCAGGGAACAACCCAAAACACCAAGTAAAAGCCCTCTCATGATTCCAGCGGATCTCTGTGCACCAGTCCAATGTAATTGTCCTGAGCAGCTCTG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU767502 lncRNA downstream 21125 11985475 ~ 11997491 (-) False LOC110529377
TU767505 lncRNA downstream 21125 11985475 ~ 11997491 (-) False LOC110529377
TU767514 lncRNA downstream 33931 11984099 ~ 11984685 (-) True G673811
TU767611 lncRNA downstream 52504 11965847 ~ 11966112 (-) True G673887
TU767446 lncRNA downstream 104416 11883093 ~ 11914200 (-) True LOC110529372
TU767671 lncRNA upstream 129854 12155596 ~ 12155883 (-) True G673941
TU767672 lncRNA upstream 130429 12156171 ~ 12156395 (-) True G673942
TU767675 lncRNA upstream 179308 12205050 ~ 12206365 (-) False G673943
TU767673 lncRNA upstream 183434 12209176 ~ 12210248 (-) True G673943
TU767698 lncRNA upstream 184900 12210642 ~ 12210867 (-) True G673966
XM_036984764.1 mRNA downstream 2870 12013722 ~ 12015746 (-) True LOC110529184
XR_005052777.1 mRNA downstream 28095 11986100 ~ 11990521 (-) False LOC110529377
XM_021611516.2 mRNA downstream 28138 11985446 ~ 11990478 (-) False LOC110529377
XR_002474370.2 mRNA downstream 132767 11883060 ~ 11885849 (-) False LOC110529372
XM_036984754.1 mRNA downstream 178619 11828959 ~ 11839997 (-) True LOC110529371
XM_021611520.2 mRNA upstream 441 12026183 ~ 12029309 (-) True LOC110529379
XM_021611530.2 mRNA upstream 136031 12161773 ~ 12163688 (-) True LOC110529387
XM_036984779.1 mRNA upstream 290864 12316606 ~ 12329268 (-) False mideasa
XM_036984780.1 mRNA upstream 290864 12316606 ~ 12330034 (-) False mideasa
XM_036984778.1 mRNA upstream 290864 12316606 ~ 12330035 (-) False mideasa
TU767509 other downstream 21125 11985475 ~ 11997491 (-) False LOC110529377
TU767500 other downstream 23927 11985475 ~ 11994689 (-) False LOC110529377
TU767510 other downstream 28172 11985475 ~ 11990444 (-) True LOC110529377
TU767508 other downstream 28253 11984834 ~ 11990363 (-) False LOC110529377
TU766687 other downstream 673834 11344473 ~ 11344782 (-) True G673053
TU767588 other upstream 114628 12140370 ~ 12141994 (-) True G673867
TU767753 other upstream 258095 12283837 ~ 12284220 (-) True G674015
TU768544 other upstream 590138 12615880 ~ 12697323 (-) True lpgat1
TU769232 other upstream 1349197 13374939 ~ 13398443 (-) False LOC110529426
TU769234 other upstream 1349197 13374939 ~ 13378281 (-) True LOC110529426

Expression Profile