RNA id: TU768046



Basic Information


Item Value
RNA id TU768046
length 1689
lncRNA type antisense_over
GC content 0.42
exon number 4
gene id G674254
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 12429554 ~ 12431319 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCGTGTTTATTTCaggaagtgaaatttaaaaaggAGAAAGGTGTTGCAGAGCCAGATACAGCAGAGgcatccctgttcctggagtgcatTGACATTCtgttccaactaggcaccacacctgaccaacggagctaattgatcagttcggTGATGGCAAATATTCAACACACCTggccctccaggaccagggttgcctacccgAGACACAACATTATGTCCAGCATGACACACTATAGAAGAAAAATACCAAAcccacacccctccctccccctaacACATGCAAATCGTTACGTTGCTGGTTAAAACCATACCTAAGCAGTAGTAGTTATTGTATTTGAAAAGACGAGTTAAAACAACCAAAACAGTACATTAGTGCAAACTAGCAGCAAGTGGACTCGACAGATACTAGGAAAGTGGGTGTTTGTGACTTCTTTGTATATTCTGTGCTGCATCTGATTTCAAGCAGAACATGTGCTTTCAGAGGATCAGCGATACAGTCCTGTAACTCCCACACTGATACTGTATGTCTTATGACAATACGTTATTCTCAGTTTAACATACAGGCCTTCGCCCACACCACATTCCTCACTTTAGTTTCTGTAAAGAAAAAATATCTTCCCTTCACAATGGTTGATTGAATAGGAATGTAGTGTTAATTAGGGAGTGATAATTGTTAACTTGCAGCCAGTTTAGTTTAAGGTATAAAGAGTGCATGCATGTATTCACTACACGTTATGAGTCAATTTATTTGTTAAGGAATGTGACTATTGAGGTAAGCCAATAGTCTTAAAGTGTAAACCAGAGGTCTTTACGTGAATACTGTTTCactgcgtctgaaatggcaccaaAACATACATTGGAAAAAACACATGACCACTTTAACATTTGCAAAATAAAACTTTAAAGAGTAAGAAACAGTCGAGTGACAAAGTTCCTTCTCATAGAATAATTCAAATTGAAACGTTTGTATGtggaccccgggaagagtagctgctgcatgggCAACAACTACTGGGGATCCTAATGAACTAAACATTCACGAAAAGAACCAACCGGCTCCGTGCTGAAAGTTCATGATAGACCATATTGATAAATAACTTATTAATAATCCCAACATTTGGACTGCAATCAGCTCTCCCACTCCCCACCTGAGCTCAGGTAAAGGTGTCGTCATAACTACAGCTACATCTCATTCTGATAATACAAAAGGAAGTTGGGGGGGGGCGCATCACACTCACATCAAAGGAAGATGCCCACACACAGCACCATGCATAAGTACATCGGAACGCGAGACCGAAAATTCTGATAGTTGTGTGTAAAAACTCCTTAAAAATGTTCAAAATATAGCTCATAATACTGACTAAAGTGACAACGAGTCGTTTTTCTTTTAAAACAGAAGCAAATGGCTACACAAAATATACTAGAAGCATAAgtacaaaaaaaatactaaaacacctaggggggtgggggtggggggtgggacagGGACAGGCCAAGACCTTCCCCTGTGTCCCTGCAAAGCTTTCCCAATTTTTTTTGTGAATGACAGCAAAGTCCTGTGTGAGAGGAtgaggacagggggggTGAGGCTCCTCTGCTATGAGGAGACGGTGACCGGATTCAAGAATCCGTTCCGGCTGTAGAACTTAGAGAAGGCCTCTTCCAGAACCGAAGCGAGTCGTGGCTGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU768024 lncRNA downstream 44911 12371350 ~ 12384643 (-) True capn3b
TU767990 lncRNA downstream 75754 12353466 ~ 12353800 (-) True G674209
TU767991 lncRNA downstream 76420 12350335 ~ 12353134 (-) False G674209
TU767968 lncRNA downstream 104172 12325158 ~ 12325382 (-) True G674204
TU767967 lncRNA downstream 108506 12320206 ~ 12321048 (-) True mideasa
TU767986 lncRNA upstream 1128 12432447 ~ 12432797 (-) False G674208
TU767987 lncRNA upstream 1128 12432447 ~ 12433143 (-) True G674208
TU768123 lncRNA upstream 135728 12567047 ~ 12567554 (-) True G674326
TU768130 lncRNA upstream 141779 12573098 ~ 12573901 (-) True G674332
TU768132 lncRNA upstream 144557 12575876 ~ 12576161 (-) True G674334
XM_036984788.1 mRNA downstream 17294 12374861 ~ 12412260 (-) False capn3b
XM_036984789.1 mRNA downstream 17294 12374861 ~ 12412260 (-) False capn3b
XM_036984787.1 mRNA downstream 17295 12374861 ~ 12412259 (-) False capn3b
XM_036984790.1 mRNA downstream 45018 12374861 ~ 12384536 (-) False capn3b
XM_036984786.1 mRNA downstream 80866 12345907 ~ 12348688 (-) True churc1
XM_036984795.1 mRNA upstream 8659 12439978 ~ 12457013 (-) False si:dkey-12h9.6
XR_005052778.1 mRNA upstream 10405 12441724 ~ 12457014 (-) True si:dkey-12h9.6
XM_021611563.2 mRNA upstream 110551 12541870 ~ 12552126 (-) True rd3
NM_001124528.1 mRNA upstream 161363 12592682 ~ 12602018 (-) True slc30a1a
XM_021611564.2 mRNA upstream 173377 12604696 ~ 12610815 (-) True nek2
TU767753 other downstream 145334 12283837 ~ 12284220 (-) True G674015
TU767588 other downstream 287560 12140370 ~ 12141994 (-) True G673867
TU767583 other downstream 403812 12018616 ~ 12025742 (-) True G673863
TU767509 other downstream 432063 11985475 ~ 11997491 (-) False LOC110529377
TU768544 other upstream 184561 12615880 ~ 12697323 (-) True lpgat1
TU769232 other upstream 943620 13374939 ~ 13398443 (-) False LOC110529426
TU769234 other upstream 943620 13374939 ~ 13378281 (-) True LOC110529426
TU769335 other upstream 1052774 13484093 ~ 13484934 (-) True G675413
TU769337 other upstream 1054360 13485679 ~ 13486137 (-) True G675415

Expression Profile