RNA id: TU768649



Basic Information


Item Value
RNA id TU768649
length 447
lncRNA type read_through
GC content 0.47
exon number 2
gene id G674818
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 12781640 ~ 12820029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tactttgttatataccctttgttggcaatgacagaggtcaaacgttttctgtcttcacaaggttttcacacactgttgctggtattttggcccattcctccatgcagatctcctctagagcagtgatgttttggggctgttgctgggcaacacggactttcaactccctccaaagatttatggggttgagatctggagactggctaggccactccaggaccttgaaatgcttcttatgaagccactccttcgttgcccgggcggtgtgtttgggatcattgtcatgctgaaagacccagccatgtttcatcttcaatgcccttgctgatggaaggaggttttcactcaaaatatcacgatacatggccccattcattctttcctttacacggatcagtcgtcctggtccctttgcagaaaaacagccccaaagcatgaggtttccac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU768637 lncRNA downstream 14790 12766373 ~ 12766850 (-) True G674806
TU768601 lncRNA downstream 77372 12704067 ~ 12704268 (-) True G674770
TU768545 lncRNA downstream 82316 12699176 ~ 12699324 (-) True ints7
TU768561 lncRNA downstream 138844 12642426 ~ 12642796 (-) True G674732
TU768551 lncRNA downstream 155797 12624425 ~ 12625843 (-) True G674722
TU768715 lncRNA upstream 50527 12870556 ~ 12871735 (-) True G674877
TU768736 lncRNA upstream 82462 12902491 ~ 12903215 (-) False G674897
TU768737 lncRNA upstream 82462 12902491 ~ 12903493 (-) True G674897
TU768676 lncRNA upstream 107848 12927877 ~ 12928553 (-) True G674842
TU768839 lncRNA upstream 299299 13119328 ~ 13120250 (-) True G674995
XM_036986823.1 mRNA downstream 74241 12697506 ~ 12707399 (-) False ints7
XM_036984801.1 mRNA downstream 84317 12615879 ~ 12697323 (-) False lpgat1
XM_021611564.2 mRNA downstream 170825 12604696 ~ 12610815 (-) True nek2
NM_001124528.1 mRNA downstream 179622 12592682 ~ 12602018 (-) True slc30a1a
XM_021611563.2 mRNA downstream 229514 12541870 ~ 12552126 (-) True rd3
XM_036986824.1 mRNA upstream 109234 12929263 ~ 12943135 (-) True sytl3
XM_021611574.2 mRNA upstream 131248 12951277 ~ 12999904 (-) True enpp1
XR_005052779.1 mRNA upstream 339436 13159465 ~ 13164697 (-) True LOC110529421
XM_021611580.2 mRNA upstream 500426 13320455 ~ 13331256 (-) False LOC110529423
XM_036984806.1 mRNA upstream 500426 13320455 ~ 13331260 (-) True LOC110529423
TU768544 other downstream 84317 12615880 ~ 12697323 (-) True lpgat1
TU767753 other downstream 497420 12283837 ~ 12284220 (-) True G674015
TU767588 other downstream 639646 12140370 ~ 12141994 (-) True G673867
TU767583 other downstream 755898 12018616 ~ 12025742 (-) True G673863
TU767510 other downstream 791196 11985475 ~ 11990444 (-) True LOC110529377
TU769232 other upstream 554910 13374939 ~ 13398443 (-) False LOC110529426
TU769234 other upstream 554910 13374939 ~ 13378281 (-) True LOC110529426
TU769335 other upstream 664064 13484093 ~ 13484934 (-) True G675413
TU769337 other upstream 665650 13485679 ~ 13486137 (-) True G675415
TU769793 other upstream 1163597 13983626 ~ 13986108 (-) False G675834

Expression Profile