RNA id: TU768715


Basic Information

Item Value
RNA id TU768715
length 1138
lncRNA type antisense_over
GC content 0.34
exon number 3
gene id G674877
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 12870556 ~ 12871735 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTAGCTTTAACATGATTTATTGGGTTTAGGCATACAACTACAAAAAAAAGtgcaaaattacatttaaaagtCCTTTATAAAAACACCACATAATCTGAGAATTTTACGAATTGCTGTTGCTacataaaataggcctactgtagatTAAGTCTATTGTGGGAAGTGGTAATTTAATACCACACATTCATTCTAACAAAATAACTATGGCGTCATAAACAAACAAAAGTAAGATATTAGATGCACGTGTATATTTGTTTGGATTACCATTCTTGTGTTTCTATTTGTATAGTTGAGTAATAGTGCGCGTCAGAAGCACACCCTCTAAAACTCAACCTAGGAAACGCTGTGAACGGGTTGGGGAGGTTTCATAAATGGAAACGGACCAATAGTTGAGTAGGATTAAAATAGAACGGTATATATCAGAGATAAAACGCTGAAGTGCGTGCACTAAAATGCGCGCTATAGGTCACAACGCATGCATTCTACTGGACCGAAACAGCCACTTGTAAAGAGGAAATAGTTTACAATCTATTTATAAACAACAAGGATCGTATACATGTGTCCTGAAACACAGATGTACTGTACTTTCCAGCATGTCTTAtttgtttaaattttttttttttaaatagcataATGGTATGACCGCAAGAGCTAATGTTTGGTAAACATTTAGTTTACCAAACAAGTAGGCAATATTTTTGGTTTAGCAGATTACTTTCAAGTTAAGGCACTGGCACAAATACTATAGGATTGTTGTTGAGGGATGTGACTTTTTGTAAACCGGAATTTAGTGATTGAACACCAGTATAATTTCAAGAGACATACAATTTTGGGAAAATAAGACAAGTCACCAATTGCAGATAATGAGctactgaaacacaagcctccaACACATTACATCAAAAGTCAGTAAACTCTGTCGACAACACTAAGGTTAAGGACAGGAAACTAATAGGCTATAAATGCACTGTCCATGAAACCAAAGACTAATGAGATTTGTAGAAAATGCTAAGAGTTAAATCTATAGTCTTTATTGTAGACAGTTGTTCGATATTTTCAAATCATGAATATAAGTAGagtaaatcattttttaataACCATTTATGTAGAGATTTTCCTTTCGCCATTCAGCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU768652 lncRNA downstream 46408 12782905 ~ 12824148 (-) True G674820
TU768649 lncRNA downstream 50527 12781640 ~ 12820029 (-) True G674818
TU768576 lncRNA downstream 78007 12792137 ~ 12792549 (-) True G674747
TU768637 lncRNA downstream 103706 12766373 ~ 12766850 (-) True G674806
TU768601 lncRNA downstream 166288 12704067 ~ 12704268 (-) True G674770
TU768736 lncRNA upstream 30756 12902491 ~ 12903215 (-) False G674897
TU768737 lncRNA upstream 30756 12902491 ~ 12903493 (-) True G674897
TU768676 lncRNA upstream 56142 12927877 ~ 12928553 (-) True G674842
TU768839 lncRNA upstream 247593 13119328 ~ 13120250 (-) True G674995
TU768881 lncRNA upstream 310866 13182601 ~ 13182928 (-) True G675036
XM_036986823.1 mRNA downstream 163157 12697506 ~ 12707399 (-) False ints7
XM_036984801.1 mRNA downstream 173233 12615879 ~ 12697323 (-) False lpgat1
XM_021611564.2 mRNA downstream 259741 12604696 ~ 12610815 (-) True nek2
NM_001124528.1 mRNA downstream 268538 12592682 ~ 12602018 (-) True slc30a1a
XM_021611563.2 mRNA downstream 318430 12541870 ~ 12552126 (-) True rd3
XM_036986824.1 mRNA upstream 57528 12929263 ~ 12943135 (-) True sytl3
XM_021611574.2 mRNA upstream 79542 12951277 ~ 12999904 (-) True enpp1
XR_005052779.1 mRNA upstream 287730 13159465 ~ 13164697 (-) True LOC110529421
XM_021611580.2 mRNA upstream 448720 13320455 ~ 13331256 (-) False LOC110529423
XM_036984806.1 mRNA upstream 448720 13320455 ~ 13331260 (-) True LOC110529423
TU768544 other downstream 173233 12615880 ~ 12697323 (-) True lpgat1
TU767753 other downstream 586336 12283837 ~ 12284220 (-) True G674015
TU767588 other downstream 728562 12140370 ~ 12141994 (-) True G673867
TU767583 other downstream 844814 12018616 ~ 12025742 (-) True G673863
TU767510 other downstream 880112 11985475 ~ 11990444 (-) True LOC110529377
TU769232 other upstream 503204 13374939 ~ 13398443 (-) False LOC110529426
TU769234 other upstream 503204 13374939 ~ 13378281 (-) True LOC110529426
TU769335 other upstream 612358 13484093 ~ 13484934 (-) True G675413
TU769337 other upstream 613944 13485679 ~ 13486137 (-) True G675415
TU769793 other upstream 1111891 13983626 ~ 13986108 (-) False G675834

Expression Profile