RNA id: TU769303



Basic Information


Item Value
RNA id TU769303
length 262
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G675385
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 13423081 ~ 13423661 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttcaaattgatgggaagatggatggagccaaatacaggaccattctggaagagaacctgatggagtctgcaaaagacctgagactgggac

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU769245 lncRNA downstream 7801 13409748 ~ 13415280 (-) True G675337
TU769278 lncRNA downstream 19833 13402439 ~ 13403248 (-) True G675360
TU769270 lncRNA downstream 51757 13370868 ~ 13371324 (-) True G675353
TU769268 lncRNA downstream 63928 13358620 ~ 13359153 (-) True G675351
TU769045 lncRNA downstream 90177 13332688 ~ 13332904 (-) True G675174
TU769336 lncRNA upstream 61388 13485049 ~ 13485449 (-) True G675414
TU769338 lncRNA upstream 62598 13486259 ~ 13486787 (-) True G675416
TU769339 lncRNA upstream 64265 13487926 ~ 13489379 (-) True G675417
TU769250 lncRNA upstream 72773 13496434 ~ 13509103 (-) False tmem151ba
TU769251 lncRNA upstream 72773 13496434 ~ 13509103 (-) True tmem151ba
XM_021611587.2 mRNA downstream 38626 13375542 ~ 13384455 (-) False LOC110529426
XM_036984806.1 mRNA downstream 91821 13320455 ~ 13331260 (-) True LOC110529423
XM_021611580.2 mRNA downstream 91825 13320455 ~ 13331256 (-) False LOC110529423
XR_005052779.1 mRNA downstream 258384 13159465 ~ 13164697 (-) True LOC110529421
XM_021611574.2 mRNA downstream 423177 12951277 ~ 12999904 (-) True enpp1
XM_021611598.2 mRNA upstream 74357 13498018 ~ 13509334 (-) False tmem151ba
NM_001124231.1 mRNA upstream 128587 13552248 ~ 13558656 (-) False hsp90ab1
XM_021611214.2 mRNA upstream 129454 13553115 ~ 13558751 (-) True hsp90ab1
XM_021611605.2 mRNA upstream 174715 13598376 ~ 13601561 (-) True LOC110529434
XM_021611607.2 mRNA upstream 203100 13626761 ~ 13632855 (-) False LOC110529435
TU769232 other downstream 24638 13374939 ~ 13398443 (-) False LOC110529426
TU769234 other downstream 44800 13374939 ~ 13378281 (-) True LOC110529426
TU768544 other downstream 725758 12615880 ~ 12697323 (-) True lpgat1
TU767753 other downstream 1138861 12283837 ~ 12284220 (-) True G674015
TU767588 other downstream 1281087 12140370 ~ 12141994 (-) True G673867
TU769335 other upstream 60432 13484093 ~ 13484934 (-) True G675413
TU769337 other upstream 62018 13485679 ~ 13486137 (-) True G675415
TU769793 other upstream 559965 13983626 ~ 13986108 (-) False G675834
TU769790 other upstream 560183 13983844 ~ 13986108 (-) True G675834
TU770045 other upstream 783326 14206987 ~ 14207625 (-) True G676077

Expression Profile