RNA id: TU769287



Basic Information


Item Value
RNA id TU769287
length 756
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G675369
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 13516639 ~ 13517394 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTCCATCTTCAGTGATGGTGGTGAGAAGATTTTCTTCATGTTCACTGCATTCGTTGTTCTCTGCGCTGTCATTTTTAGACTTTGAAATGTTGCAGTCCCCTATAATCTCACTCAAACTCTCAACATTTAGTGACGATGAGCCATAAGCAGAATCCAACCGCTCCTCTGTGCTGGTGATAGTCAATTTATCCCTGGCTTCACTGGGTTCAGAAGTCGAATCCTGATCTGTTTTGATAAAGGGGTCATCTTTCATTAATGATTGGAAGGATTCAACACCAGAGTCCATTTGGTTATCCTCCAACAAATCCAATTTCCGCTTCGCATCTTCGGCGCTTTGCATGGTGGCCCGCGATCCACAGTCACTCCAGGTAGTCTTGACCGGTTTAATCCCCGAGAGGTCTATATGTTGCTTGATGGTGCGAGCAGTTCTCGGGAGGAAAACTCGATCACACCTGAGTAGGAATTCACTGTTCCTTTCTGAAACCAAAGGTAGCGGTTGCGTTTCATGCCATCGGATCGAGCGCGTTTACTTTCCCCCACACCACTAGTTTAGGCTACATGAAAATAAGTGGAGTCATCTTGCAACAACGCATAAATGGTATAAACGCTTCCCTACACCCAAAATGGGGCATTTACTTCAAAACATCATAAGAGTCTTAACATCAGCAACAGTCTTTAAAATAACGTTGACACTGTCATAACCTGTGGTAAACCTGCATAGTTGAGAGCATGTGAGCGCTGAAACGCGATAGGGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU769344 lncRNA downstream 4871 13510945 ~ 13511768 (-) True G675422
TU769250 lncRNA downstream 7536 13496434 ~ 13509103 (-) False tmem151ba
TU769251 lncRNA downstream 7536 13496434 ~ 13509103 (-) True tmem151ba
TU769339 lncRNA downstream 27260 13487926 ~ 13489379 (-) True G675417
TU769338 lncRNA downstream 29852 13486259 ~ 13486787 (-) True G675416
TU769295 lncRNA upstream 1263 13518657 ~ 13519773 (-) True G675377
TU769289 lncRNA upstream 7134 13524528 ~ 13526589 (-) True G675371
TU769348 lncRNA upstream 12144 13529538 ~ 13530033 (-) True G675426
TU769349 lncRNA upstream 13691 13531085 ~ 13531462 (-) True G675427
TU769350 lncRNA upstream 14156 13531550 ~ 13531926 (-) True G675428
XM_021611598.2 mRNA downstream 7305 13498018 ~ 13509334 (-) False tmem151ba
XM_021611587.2 mRNA downstream 132184 13375542 ~ 13384455 (-) False LOC110529426
XM_036984806.1 mRNA downstream 185379 13320455 ~ 13331260 (-) True LOC110529423
XM_021611580.2 mRNA downstream 185383 13320455 ~ 13331256 (-) False LOC110529423
XR_005052779.1 mRNA downstream 351942 13159465 ~ 13164697 (-) True LOC110529421
NM_001124231.1 mRNA upstream 34854 13552248 ~ 13558656 (-) False hsp90ab1
XM_021611214.2 mRNA upstream 35721 13553115 ~ 13558751 (-) True hsp90ab1
XM_021611605.2 mRNA upstream 80982 13598376 ~ 13601561 (-) True LOC110529434
XM_021611607.2 mRNA upstream 109367 13626761 ~ 13632855 (-) False LOC110529435
XM_021611606.2 mRNA upstream 109367 13626761 ~ 13632856 (-) True LOC110529435
TU769337 other downstream 30502 13485679 ~ 13486137 (-) True G675415
TU769335 other downstream 31705 13484093 ~ 13484934 (-) True G675413
TU769232 other downstream 118196 13374939 ~ 13398443 (-) False LOC110529426
TU769234 other downstream 138358 13374939 ~ 13378281 (-) True LOC110529426
TU768544 other downstream 819316 12615880 ~ 12697323 (-) True lpgat1
TU769793 other upstream 466232 13983626 ~ 13986108 (-) False G675834
TU769790 other upstream 466450 13983844 ~ 13986108 (-) True G675834
TU770045 other upstream 689593 14206987 ~ 14207625 (-) True G676077
TU770156 other upstream 770455 14287849 ~ 14288345 (-) True G676178
TU770677 other upstream 994196 14511590 ~ 14516528 (-) True G676635

Expression Profile