RNA id: TU769793


Basic Information

Item Value
RNA id TU769793
length 2483
RNA type TUCP
GC content 0.44
exon number 1
gene id G675834
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 13983626 ~ 13986108 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGTTCCAGCTGATTTATTTAGTTTTGTCAAGATACAGCCTTCAGCATGACGACACGTAACGCAGATGATCCATTTAAGAGTAGCCTATATTGCACAAAATAATGAAGAAAACAATATGTGCCATTAAGATGATAAAATGCAAGAAAATGCAGTTTCACACCTGCTATCTGGGACCCATTCACACCGATATACATAAACTCCTAACTTTACTATTTTACAGAACATATACAATCTTGAATCTAGTACCAGCAATGAGGTCTATATTCCCCAATTGCAACTTAACTCCTTAAAACACCCCAAATCTGATCTAGTTCTGTACATACATAGCTTAAAATAAACGCAAGGCATTTAGATGCAAATTTATATTGTTTAACCCTTGTGTGCTAAACTAAAATGAAACCGGGTAGAACTAGAAGTGCCTGAAAAAAAACTCACTGAAAGCACAGTAAGAACATTCCCTTAGTTTAACTGTACAAAAATATGCCTGAAaatattttacttttttttattttttaaagatgaGGTATGTTGGTTATGTATCAAAATGCTGCTTCCTGTCATACCTGTGTTCTACAGCGGGTTTAGCCTACTTTTCCATACCAGTAGGGATTCGGAACTGATAAGAAAAAAACAGTTTTGTGAAATACAGAAAAATCACATAAAACCTTTTGAAAAGTTACACATCCTGAATGAACAGTGTCTCAGATTTAGCCTGCATCTGCCCAGTCGTGCTTTCAGAACCCAAGTGGTTACAAGTAGGATGGGAATGCATAGTTCAGATTCTACTCTTTGTGGTCCACTTAATTTGAGCAGTTTCACTGCAGACCCGAAGAAAATCCATAAAACCCTGTCAGGGTGACATGAATGTCACTTTTTTTTGCAATGGTACCACATTGTAACGAATCTTGGTTCAGTTCATGGAGGacaccctccttccctccatggtAATAACAGCGCTGGGGAGGGAACCGGCTGATCATAACGCTGTCCCACCTACTACCAGAGGATGACTCCTTCTGTACTTAGTTAGCTAGTAGGTAAATACCAAATCTGAAAAGTTAGCCTCAAGCCAATCCCCTGCGATCATTTCGCTCAGCTCGGGGGTGCAATAGTCTGGGAATTCAAAGTGAGAGCTGAGGCTGCCCTCACTGAAAGAGTCCAAGTCCTTATCcacaaaggaaagagagagattccCTGAATTCGAGTTCCCCAGCTCCGCTCCGTGAGCACAGGATGCTAAATTTAAACTGAAGTCAACCAGTAAATCATCCGCGTCTTCGCTGGAGCTGGACGAGCTGGACACGGACCTGAATGAAGATGCTGGTGAGAGTGAAGCAGGACAAGTTGTGCTCTGCTTGGTAATGTTCTTGAAATTGTAGAACAGTCTGTTGGAAGCTGTGTTCGGATTCCGAGACTCATCGTACATGCTCGCGCCCTCTGTCTCGGCAGTGGAGCTCAAAGTGGGGCTCGCGGGCACTTTGGCGATGTTGTACGGTATCGGTTCCTCGTCCTCCTCCACTTTAATCCGAGAGGACAGCTCCTCCTCGTAGTCCTCTTCGTCATCCTCATCGTCAGTATATTCCATTTTTACGGACTTGCTAGTAGTTTTAAAGCTGGTGAAAACATAGTCGTAGCGAGGGTCGTGAGACGGTCTCGTTTTCACCACCTTAGTAGTTTTCAATTTAGTGAATTTCTTACTGGGAGCTTTTACATGTTTGAGGCTGGTCTTCTCCGGTGACTGCACCGCTGGTTTAGTGAAACTGTCGAGCTTTGGTTTCTTCTTGGGTCGGTACTTGTAGTCGGGGTAATCAGCCATGTGTTGTAGCCGGAGCCTCTCGGCTTCCCTGATAAACGGGATCTTTTCACTGTCCTTCAGCAATTTCCACCGCTTTCCAAGTCGTTTGGAGATTTCCGCGTTGTGCATGTCCGGAGACTGCTCCATGATCTTTCTCCTCTCGACTTTCGACCACACCATAAATGCATTCATGGGTCGTTTGATGTGACCAGTTGCTGTCTTGCACCAGTCGGCTTTCACGGGTTTCAGTGGCACCGGGCTGCACGCCATCATTTCGCTTTCCTCCGTGTCTGTAGCTTCCCTGGACATGCTACTCTCCGTCTCGCTGTGTTCTGTTTGCTGTACCATGTTTCCGTCGTATGTTTCAAAGGCACTGCAGGGTTTCAAATACCCACAGTCACTTTCTGCTAACTCCTTGCTTTGCTAACTAGTTTTTGGTCACTCTACACCTCCAGCTCATTCAAACAACTCTTTCTCAAAGTTATCAACTGCCCTCTTAACTAGTTCTTTGGGCTTTCATATCGGTTACGTCATTTTTTAGTACCCAATCACGGCTCTTAACTCCTCCCAGCGGCCgccagacattattttaaccctTTGCTGCCACACAAGATTTCATTGGTGGTGGGGGCATGTGGGCGGAATTATTCATGCTGTCTGGATTTATACCTCAGTGGGTGTGCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU769782 lncRNA downstream 4914 13978488 ~ 13978712 (-) True G675826
TU769766 lncRNA downstream 18894 13964506 ~ 13964732 (-) True G675810
TU769696 lncRNA downstream 96875 13886551 ~ 13886751 (-) True G675743
TU769695 lncRNA downstream 98162 13885254 ~ 13885464 (-) True G675742
TU769626 lncRNA downstream 155759 13827550 ~ 13827867 (-) True G675675
TU769796 lncRNA upstream 2918 13989026 ~ 13989305 (-) True G675837
TU769800 lncRNA upstream 4299 13990407 ~ 13990640 (-) True G675841
TU769801 lncRNA upstream 5048 13991156 ~ 13991384 (-) True G675842
TU769836 lncRNA upstream 27845 14013953 ~ 14014194 (-) True G675877
TU769838 lncRNA upstream 29246 14015354 ~ 14015591 (-) True G675879
XM_021611606.2 mRNA downstream 350770 13626761 ~ 13632856 (-) True LOC110529435
XM_021611607.2 mRNA downstream 350771 13626761 ~ 13632855 (-) False LOC110529435
XM_021611605.2 mRNA downstream 382065 13598376 ~ 13601561 (-) True LOC110529434
XM_021611214.2 mRNA downstream 424875 13553115 ~ 13558751 (-) True hsp90ab1
NM_001124231.1 mRNA downstream 424970 13552248 ~ 13558656 (-) False hsp90ab1
XM_036984822.1 mRNA upstream 354392 14340500 ~ 14389518 (-) False LOC110529441
XM_036984821.1 mRNA upstream 354392 14340500 ~ 14392658 (-) False LOC110529441
XM_036984823.1 mRNA upstream 354392 14340500 ~ 14392658 (-) False LOC110529441
XM_036984824.1 mRNA upstream 354392 14340500 ~ 14392658 (-) False LOC110529441
XM_036984825.1 mRNA upstream 354392 14340500 ~ 14392658 (-) False LOC110529441
TU769337 other downstream 497489 13485679 ~ 13486137 (-) True G675415
TU769335 other downstream 498692 13484093 ~ 13484934 (-) True G675413
TU769232 other downstream 585183 13374939 ~ 13398443 (-) False LOC110529426
TU769234 other downstream 605345 13374939 ~ 13378281 (-) True LOC110529426
TU768544 other downstream 1286303 12615880 ~ 12697323 (-) True lpgat1
TU770045 other upstream 220879 14206987 ~ 14207625 (-) True G676077
TU770156 other upstream 301741 14287849 ~ 14288345 (-) True G676178
TU770677 other upstream 525482 14511590 ~ 14516528 (-) True G676635
TU773511 other upstream 2446513 16432621 ~ 16433014 (-) True G679087
TU773640 other upstream 2638982 16625090 ~ 16630259 (-) False G679210

Expression Profile