RNA id: TU770747


Basic Information

Item Value
RNA id TU770747
length 2471
lncRNA type read_through
GC content 0.44
exon number 4
gene id G676696
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 14615685 ~ 14746960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTTTTTGTAATAAAATTTCAACAGTACTATACAAATAAGAAAAGAGATCTACTGCAAATAGGGTCCGTTGTGAATGGTAATATACATTTGTTGTCTGTGAACCAGACACCACAAGTACAcatcctaaatggaaccctagTCTCTATATTGTGGACTACTTTTCATCAAGGCCCACAtagaactctggtcaaaagtagtgcactacatggggaaaaGGGTGCCAGTTGAGATCTAGTCTGGGCCATGTCCCTTTTCAAGTATTTACAGTTTCAGTAAGAGCTTTAGAAGTCAGCATCCAGCCGGAAGGAGTTGTCTGTGGTGCCAGACATCACACCCATTCTCTGGTACTCCCCTACTCGTTTCTCAAAGAAGTTAGTCTTGCCCTCCAATGAGATGTTCTCCATGAAGTCAAAAGGATTCTCCACTCTGTAGATCTAGAAGAGAAGTTAATTGGTGTCTGCTAGTGGAATTAAAATGCTTTCATTAACCCCACCCATTTCTAGTAGCCAGAGTGCCTGTGTGCAATAAAAGTCAACTCATTGTCATGTTTGGGTTAATGCACAATAGTGCTGGCAAGAGCACATacacatctgggaccaggctacatttAAACTACAGCTTTACAGGCAAGACTCAGTCAGGCGTCTATATCGTGTTGGCACACCCTCAGTCAGCAGACCACATGCCCACTGAGCTGAGAACCAGCACCAACACTCAGCTCCCATTATCAGCTGAAGTACGTACCCCTGCGCTTCTCATCATTGCCAGCCCATGTCTATCACAAGAAAATTAAGAACTAATGGTCCACGGTCACAGGTAGGCCAATTATGATCCGCGCCACCAATTGGACTTTTGACTAATCACACCAAATCTTACAGAGCTGATCAGTCAAAATAACTATTTGAAAAAAGATTAGAATTGGACTGCCCATCTAAACATAGCCTTAGAATTACAACAGGTGTTGGATTGAACTTATTCTCCATATGAAAGGAGAAAACATGAGGGACAGCATGCACCCAACTTCCTTTACATAGTgcactggtcaaagtagtgcactacatagaaaGTGGGTTGCCATTAGGGACTGACCCATAGACTACCATCTCACCTTGTCAAAGCCCAGCTCCAGCATCAGCCTGTCAGCCACAAACTCGATGTACTGGGTCATTAGGTCGCAGTTCATACCAATCAGCTTTACTGGAAGGGCTTTCGTCAGGAACTCCTGAAATGGGAACAGACATCAGCATGTATTCACTAGTTCAGATCTTTAATATTCAAATCCGGATACACAGGTATATCATTTTCTATTAAGCACAATTAGGGccgtgtgtgtcccaaatggcttccCATTTACTGCCCAGGGCCCATAGCTCTGTAGTGCAGTATCAGACATCTAGTGCAGTATAGGGAAACGGTGACATTTGACTCACATACCAAGAAAAGGCTTAATCTGAGTCAAGGCAACAGGCCCTTATTGTGTAATCAATTTACCTGCTCAATCTCTACTGCGTTCCTGATGAGCTTGGTGACCGTCTCCTTTGAGGGCTTGTGCACCAGGTGCTTGAACATGAGGCAGGCAAAGTCACAGTGGAGGCCCTGGATTTAGACAGAACCAGTTAGTAAGAATGCTGGTGGTAGTGACAAGTTCAACCAGGTTCACCCTCTGGATAATTGTGTAGAAGATTTTTAATCAACAGTGAAAAGACCCACCTCGTCTCTGCTGATGAGCTCATTTGAAAAGGTCAGGCCAGGCATGAGCCCCCTCTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAGAAGAAGATCCCCTCAACAGCAGCAAATGCAACCACACGCTCACCTGGAATACAAGCAACACCATTACCAACTGATTGACCACAACAATTCTGTGCAGGTTTTTAAGAGATGTACCTACCAAATTCAGCCTTTTTGTTACCGATCCAGTTCAGGGCCCAATCAGCCTTCCTCTTCACACAGGGGAGAGTTTCAATGGCATTGAAAAGGTAGTCCCTGTGTGACAAAGTACATTGGGCACATTCTCAGAATGTTCAAGGCTGCACTACAAAATGCTTAATAAATTGCTTAGGGGGTTTGAAATATGGGCATTGGTAGAGTACATTTTACTATCATGAGGCTCAGTCAGGCGTCTATATCGTGTTGGCACCCCTCAGTCAGCAGACCACATGCCCACTAATCTGAAAACCAGCGCCAACACTCAGCTCCCATTATCAGCTGAGGTACGTACCCCTGCGCTTCTCATCATTGCCAGATAATACAAATATGGTTAACATACTAAATATCCAATACTGACCTCTCTTTAGGGTCTTTGATGTAGGTGTCAATGAGCAGGCTGTACATCTCAGAGTGGATGTTCTCCATGGCGATTTGGAAACCATAGAAGCATCTTGCTTCAGTCACCTGGACTTCCTGTGTAAATCGCTCTACCTAgttctgactgatgaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU770737 lncRNA downstream 12903 14602515 ~ 14602782 (-) True G676691
TU770694 lncRNA downstream 82244 14533213 ~ 14533441 (-) True G676649
TU770693 lncRNA downstream 82733 14532700 ~ 14532952 (-) True G676648
TU770691 lncRNA downstream 83434 14529486 ~ 14532251 (-) True G676646
TU770690 lncRNA downstream 86231 14529228 ~ 14529454 (-) True G676645
TU770846 lncRNA upstream 27066 14774026 ~ 14774552 (-) True G676771
TU770899 lncRNA upstream 137402 14884362 ~ 14887465 (-) True G676822
TU771282 lncRNA upstream 286300 15033260 ~ 15033545 (-) True G677114
TU771287 lncRNA upstream 287029 15033989 ~ 15038853 (-) True si:ch73-111k22.3
TU771290 lncRNA upstream 292243 15039203 ~ 15039434 (-) True G677117
XM_021611616.2 mRNA downstream 42101 14549681 ~ 14573584 (-) True LOC110529446
XM_021611617.2 mRNA downstream 42128 14549681 ~ 14573557 (-) False LOC110529446
XM_036984827.1 mRNA downstream 144556 14396011 ~ 14471129 (-) False LOC110529444
XR_005052780.1 mRNA downstream 144556 14396011 ~ 14471129 (-) True LOC110529444
XM_036984826.1 mRNA downstream 228173 14342529 ~ 14387512 (-) True LOC110529441
XM_021611627.2 mRNA upstream 9031 14755991 ~ 14850442 (-) False LOC110529452
XM_036984834.1 mRNA upstream 9031 14755991 ~ 14850442 (-) False LOC110529452
XM_021611625.2 mRNA upstream 9035 14755995 ~ 14850442 (-) False LOC110529452
XM_036984836.1 mRNA upstream 9035 14755995 ~ 14850442 (-) False LOC110529452
XM_036984835.1 mRNA upstream 9035 14755995 ~ 14850443 (-) True LOC110529452
TU770677 other downstream 99157 14511590 ~ 14516528 (-) True G676635
TU770156 other downstream 327340 14287849 ~ 14288345 (-) True G676178
TU770045 other downstream 408060 14206987 ~ 14207625 (-) True G676077
TU769793 other downstream 629577 13983626 ~ 13986108 (-) False G675834
TU773511 other upstream 1685661 16432621 ~ 16433014 (-) True G679087
TU773640 other upstream 1878130 16625090 ~ 16630259 (-) False G679210
TU773642 other upstream 1878130 16625090 ~ 16630259 (-) True G679210
TU773944 other upstream 2366583 17113543 ~ 17114528 (-) True G679471
TU776244 other upstream 4044270 18791230 ~ 18792137 (-) True G681659

Expression Profile